RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 SOX9P48436 509 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 NOVA1P51513 510 aaKnown RBP13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 JAK3P52333 1124 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 CREMQ03060 361 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 LAMTOR4Q0VGL1 99 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 PTPAQ15257 358 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 SF3A1Q15459 793 aaKnown RBP13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 NAB2Q15742 525 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 ZSCAN23Q3MJ62 389 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 FAM171A1Q5VUB5 890 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 PKN3Q6P5Z2 889 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 CEP68Q76N32 757 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 KRT25Q7Z3Z0 450 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 C12orf50Q8NA57 414 aaPredicted RBP13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 CNNM3Q8NE01 707 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 ZCCHC14Q8WYQ9 949 aaKnown RBP13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 ASB16Q96NS5 453 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 TRMT61BQ9BVS5 477 aaKnown RBP13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 KLK14Q9P0G3 267 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 TMEM63CQ9P1W3 806 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 TCEAL9Q9UHQ7 104 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 GIT1Q9Y2X7 761 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 CLIC4Q9Y696 253 aa13.13□□□□□ -0.31
VPS9D1-207ENST00000568691 CELSR3Q9NYQ7 3312 aa13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 TADA2AO75478 443 aa13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 GDI1P31150 447 aa13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 SFNP31947 248 aa13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 OR1D2P34982 312 aa13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 VIPR2P41587 438 aa13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 PXNP49023 591 aaPredicted RBP13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 HSP90AA2PQ14568 343 aaPredicted RBP13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 UVSSAQ2YD98 709 aa13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 CD300LGQ6UXG3 332 aa13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 CCDC73Q6ZRK6 1079 aa13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 CEP57Q86XR8 500 aa13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 REXO1Q8N1G1 1221 aaKnown RBP13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 OXER1Q8TDS5 423 aa13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 LOXL4Q96JB6 756 aa13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 CSRNP2Q9H175 543 aa13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 DHX33Q9H6R0 707 aaKnown RBP13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 SF3B1O75533 1304 aaKnown RBP eCLIP13.12□□□□□ -0.31
VPS9D1-207ENST00000568691 TDRD15B5MCY1 1934 aaKnown RBP13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 FAM237AA0A1B0GTK4 181 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 CCDC194A0A1B0GVG4 234 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 WDR27A2RRH5 827 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 CASTOR2A6NHX0 329 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 PTGESO14684 152 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 EXTL3O43909 919 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 GAS7O60861 476 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 CUTAO60888 179 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 MPLP40238 635 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 TOB1P50616 345 aaPredicted RBP13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 FAM160A1Q05DH4 1040 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 LRCH2Q5VUJ6 765 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 RNF43Q68DV7 783 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 CDR2LQ86X02 465 aaPredicted RBP13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 GAB3Q8WWW8 586 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 IRF7Q92985 503 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 BBC3Q96PG8 261 aaPredicted RBP13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 ZFP14Q9HCL3 533 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 BMP2KQ9NSY1 1161 aaPredicted RBP13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 PCDHA7Q9UN72 937 aa13.11□□□□□ -0.31
VPS9D1-207ENST00000568691 C4orf47A7E2U8 309 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 EML1O00423 815 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 LAD1O00515 517 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 B4GALT5O43286 388 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 NR1I2O75469 434 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 PSMC3P17980 439 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 ARF4P18085 180 aaPredicted RBP13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 CMA1P23946 247 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 CEBPZQ03701 1054 aaKnown RBP13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 GRIK3Q13003 919 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 TTC38Q5R3I4 469 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 SH3PXD2AQ5TCZ1 1133 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 MIER3Q7Z3K6 550 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 KRI1Q8N9T8 703 aaKnown RBP13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 RNF149Q8NC42 400 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 RDM1Q8NG50 284 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 TEKT3Q9BXF9 490 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 POLR3BQ9NW08 1133 aaPredicted RBP13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 MTRRQ9UBK8 725 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 SPAG17Q6Q759 2223 aa13.1□□□□□ -0.31
VPS9D1-207ENST00000568691 ARHGEF37A1IGU5 675 aa13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 FGFR3P22607 806 aa13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 PTENP60484 403 aa13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 ATP2C1P98194 919 aaPredicted RBP13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 CCINQ13939 588 aa13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 CACNA1EQ15878 2313 aa13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 ARL6IP4Q66PJ3 421 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 RBM43Q6ZSC3 357 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 PIK3AP1Q6ZUJ8 805 aa13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 CACNA2D4Q7Z3S7 1137 aa13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 HS6ST3Q8IZP7 471 aa13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 PSPC1Q8WXF1 523 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 LRRC3BQ96PB8 259 aa13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 EDEM2Q9BV94 578 aa13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 GZF1Q9H116 711 aaPredicted RBP13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 NUP62CLQ9H1M0 184 aa13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 CLSTN2Q9H4D0 955 aa13.09□□□□□ -0.31
VPS9D1-207ENST00000568691 XPNPEP1Q9NQW7 623 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms