RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 SPTLC1O15269 473 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 ADAM12O43184 909 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 KINO60870 393 aaKnown RBP10.62□□□□□ -0.71
CLK3-220ENST00000567992 PRPF40AO75400 957 aaKnown RBP10.62□□□□□ -0.71
CLK3-220ENST00000567992 RPL17P18621 184 aaKnown RBP10.62□□□□□ -0.71
CLK3-220ENST00000567992 CA8P35219 290 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 NDUFV1P49821 464 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 CYP2J2P51589 502 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 CLCN4P51793 760 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 CLUL1Q15846 466 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 SNRNP35Q16560 246 aaKnown RBP10.62□□□□□ -0.71
CLK3-220ENST00000567992 TJAP1Q5JTD0 557 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 ANKRD54Q6NXT1 300 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 SYCE2Q6PIF2 218 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 RSPO2Q6UXX9 243 aaPredicted RBP10.62□□□□□ -0.71
CLK3-220ENST00000567992 NT5DC4Q86YG4 428 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 SLC9A9Q8IVB4 645 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 GUF1Q8N442 669 aaKnown RBP10.62□□□□□ -0.71
CLK3-220ENST00000567992 XXYLT1Q8NBI6 393 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 BEST2Q8NFU1 509 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 PLEKHO2Q8TD55 490 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 SUSD3Q96L08 255 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 CLSTN3Q9BQT9 956 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 PDE11AQ9HCR9 933 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 FNIP2Q9P278 1114 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 MAPK8IP1Q9UQF2 711 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 SSX2IPQ9Y2D8 614 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 PCDHA5Q9Y5H7 936 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 C2orf16Q68DN1 1984 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 GRXCR2A6NFK2 248 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 SYN3O14994 580 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 MBTPS2O43462 519 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 XPOTO43592 962 aaKnown RBP10.61□□□□□ -0.71
CLK3-220ENST00000567992 TBC1D4O60343 1298 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 NR3C1P04150 777 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 IL9P15248 144 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 MCM4P33991 863 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 LILRA4P59901 499 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 CYP24A1Q07973 514 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 MRPL58Q14197 206 aaKnown RBP10.61□□□□□ -0.71
CLK3-220ENST00000567992 BMS1Q14692 1282 aaKnown RBP10.61□□□□□ -0.71
CLK3-220ENST00000567992 PSMD5Q16401 504 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 NFIL3Q16649 462 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 COBLL1Q53SF7 1204 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 ZNF658Q5TYW1 1059 aaPredicted RBP10.61□□□□□ -0.71
CLK3-220ENST00000567992 KIAA1841Q6NSI8 718 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 EP400NLQ6ZTU2 488 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 C1orf127Q8N9H9 656 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 SMRP1Q8NCR6 262 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 OR5B17Q8NGF7 314 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 GOLGA5Q8TBA6 731 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 NOC3LQ8WTT2 800 aaKnown RBP10.61□□□□□ -0.71
CLK3-220ENST00000567992 CASP10Q92851 521 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 CCDC47Q96A33 483 aaKnown RBP10.61□□□□□ -0.71
CLK3-220ENST00000567992 BORCS6Q96GS4 357 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 CCDC34Q96HJ3 373 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 MFSD14AQ96MC6 490 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 GSDMAQ96QA5 445 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 EMILIN2Q9BXX0 1053 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 MTMR12Q9C0I1 747 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 S1PR5Q9H228 398 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 KIAA1586Q9HCI6 787 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.61□□□□□ -0.71
CLK3-220ENST00000567992 RMND1Q9NWS8 449 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 DPP3Q9NY33 737 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 MTRRQ9UBK8 725 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 SIX4Q9UIU6 781 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 CD207Q9UJ71 328 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 MAN1B1Q9UKM7 699 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 TRAF3IP3Q9Y228 551 aa10.61□□□□□ -0.71
CLK3-220ENST00000567992 ZNF233A6NK53 670 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 TGM5O43548 720 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 TRAPPC3O43617 180 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 SMC2O95347 1197 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 PAPLNO95428 1278 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 ADH1AP07327 375 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 BMP6P22004 513 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 KLRC2P26717 231 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 CASP4P49662 377 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 TFAMQ00059 246 aaKnown RBP10.6□□□□□ -0.71
CLK3-220ENST00000567992 CREMQ03060 361 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 SMAD4Q13485 552 aaKnown RBP10.6□□□□□ -0.71
CLK3-220ENST00000567992 MYBPC2Q14324 1141 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 PSMD6Q15008 389 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 AAK1Q2M2I8 961 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 VARS2Q5ST30 1063 aaKnown RBP10.6□□□□□ -0.71
CLK3-220ENST00000567992 LMBRD2Q68DH5 695 aaPredicted RBP10.6□□□□□ -0.71
CLK3-220ENST00000567992 PTCRAQ6ISU1 281 aaPredicted RBP10.6□□□□□ -0.71
CLK3-220ENST00000567992 LILRA6Q6PI73 481 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 PPFIBP1Q86W92 1011 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 CEP57Q86XR8 500 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 RDH13Q8NBN7 331 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 SUSD6Q92537 303 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 SMARCE1Q969G3 411 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 CGRRF1Q99675 332 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 LMBRD1Q9NUN5 540 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 INTS13Q9NVM9 706 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 CDH22Q9UJ99 828 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 PCDHB8Q9UN66 801 aa10.6□□□□□ -0.71
CLK3-220ENST00000567992 NUB1Q9Y5A7 615 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms