RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CGRRF1Q99675 332 aa21.15■□□□□ 0.98
CLN3-225ENST00000566824 GTPBP4Q9BZE4 634 aaKnown RBP21.15■□□□□ 0.98
CLN3-225ENST00000566824 SF3B1O75533 1304 aaKnown RBP eCLIP21.15■□□□□ 0.983e-9■■■■■ 164.7
CLN3-225ENST00000566824 LRRIQ3A6PVS8 624 aaPredicted RBP21.14■□□□□ 0.97
CLN3-225ENST00000566824 PSMA7O14818 248 aa21.14■□□□□ 0.97
CLN3-225ENST00000566824 TKTP29401 623 aaKnown RBP21.14■□□□□ 0.97
CLN3-225ENST00000566824 CA8P35219 290 aa21.14■□□□□ 0.97
CLN3-225ENST00000566824 SMC1AQ14683 1233 aaKnown RBP21.14■□□□□ 0.97
CLN3-225ENST00000566824 DPCR1Q3MIW9 517 aa21.14■□□□□ 0.97
CLN3-225ENST00000566824 PRSS55Q6UWB4 352 aaPredicted RBP21.14■□□□□ 0.97
CLN3-225ENST00000566824 PARD3BQ8TEW8 1205 aa21.14■□□□□ 0.97
CLN3-225ENST00000566824 IGFLR1Q9H665 355 aa21.14■□□□□ 0.97
CLN3-225ENST00000566824 NGRNQ9NPE2 291 aaKnown RBP21.14■□□□□ 0.97
CLN3-225ENST00000566824 TSC2P49815 1807 aa21.14■□□□□ 0.97
CLN3-225ENST00000566824 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.13■□□□□ 0.97
CLN3-225ENST00000566824 XPOTO43592 962 aaKnown RBP21.13■□□□□ 0.97
CLN3-225ENST00000566824 ITGB3P05106 788 aa21.13■□□□□ 0.97
CLN3-225ENST00000566824 RPL17P18621 184 aaKnown RBP21.13■□□□□ 0.97
CLN3-225ENST00000566824 FGFR3P22607 806 aa21.13■□□□□ 0.97
CLN3-225ENST00000566824 POLR2BP30876 1174 aaKnown RBP21.13■□□□□ 0.97
CLN3-225ENST00000566824 GLUD2P49448 558 aa21.13■□□□□ 0.97
CLN3-225ENST00000566824 DSG1Q02413 1049 aa21.13■□□□□ 0.97
CLN3-225ENST00000566824 STIM1Q13586 685 aa21.13■□□□□ 0.97
CLN3-225ENST00000566824 USP41Q3LFD5 358 aa21.13■□□□□ 0.97
CLN3-225ENST00000566824 CEP57Q86XR8 500 aa21.13■□□□□ 0.97
CLN3-225ENST00000566824 NT5DC4Q86YG4 428 aa21.13■□□□□ 0.97
CLN3-225ENST00000566824 WDR49Q8IV35 697 aa21.13■□□□□ 0.97
CLN3-225ENST00000566824 FAM186BQ8IYM0 893 aa21.13■□□□□ 0.97
CLN3-225ENST00000566824 VN1R2Q8NFZ6 395 aa21.13■□□□□ 0.97
CLN3-225ENST00000566824 RIN2Q8WYP3 895 aaPredicted RBP21.13■□□□□ 0.97
CLN3-225ENST00000566824 BORCS6Q96GS4 357 aa21.13■□□□□ 0.97
CLN3-225ENST00000566824 AGAP1Q9UPQ3 857 aa21.13■□□□□ 0.97
CLN3-225ENST00000566824 TMEM191BP0C7N4 346 aa21.12■□□□□ 0.97
CLN3-225ENST00000566824 AARSP49588 968 aaKnown RBP eCLIP21.12■□□□□ 0.97
CLN3-225ENST00000566824 LILRA4P59901 499 aa21.12■□□□□ 0.97
CLN3-225ENST00000566824 SURF1Q15526 300 aa21.12■□□□□ 0.97
CLN3-225ENST00000566824 PDE12Q6L8Q7 609 aaKnown RBP21.12■□□□□ 0.97
CLN3-225ENST00000566824 CSGALNACT2Q8N6G5 542 aa21.12■□□□□ 0.97
CLN3-225ENST00000566824 SUSD3Q96L08 255 aa21.12■□□□□ 0.97
CLN3-225ENST00000566824 TSG101Q99816 390 aa21.12■□□□□ 0.97
CLN3-225ENST00000566824 TLE6Q9H808 572 aa21.12■□□□□ 0.97
CLN3-225ENST00000566824 FRMD4BQ9Y2L6 1034 aa21.12■□□□□ 0.97
CLN3-225ENST00000566824 NUB1Q9Y5A7 615 aa21.12■□□□□ 0.97
CLN3-225ENST00000566824 ADAM12O43184 909 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 CLASP2O75122 1294 aaKnown RBP21.11■□□□□ 0.97
CLN3-225ENST00000566824 CST3P01034 146 aaPredicted RBP21.11■□□□□ 0.97
CLN3-225ENST00000566824 URODP06132 367 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 CNPP09543 421 aaKnown RBP21.11■□□□□ 0.97
CLN3-225ENST00000566824 TRIM49P0CI25 452 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 TRIM49CP0CI26 452 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 TNNI1P19237 187 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 RPL13P26373 211 aaKnown RBP21.11■□□□□ 0.97
CLN3-225ENST00000566824 NLRP12P59046 1061 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 CLDN10P78369 228 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 LRRC63Q05C16 580 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 DUSP6Q16828 381 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 DUOXA2Q1HG44 320 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 CCDC183Q5T5S1 534 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 RSPO2Q6UXX9 243 aaPredicted RBP21.11■□□□□ 0.97
CLN3-225ENST00000566824 TRAPPC11Q7Z392 1133 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 LNX1Q8TBB1 728 aaPredicted RBP21.11■□□□□ 0.97
CLN3-225ENST00000566824 CACTINQ8WUQ7 758 aaKnown RBP21.11■□□□□ 0.97
CLN3-225ENST00000566824 ELMO3Q96BJ8 720 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 KLHL5Q96PQ7 755 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 FNBP1Q96RU3 617 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 TTPALQ9BTX7 342 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 MRPL17Q9NRX2 175 aaKnown RBP21.11■□□□□ 0.97
CLN3-225ENST00000566824 TIMM13Q9Y5L4 95 aaPredicted RBP21.11■□□□□ 0.97
CLN3-225ENST00000566824 IRAK3Q9Y616 596 aa21.11■□□□□ 0.97
CLN3-225ENST00000566824 CETN3O15182 167 aa21.1■□□□□ 0.97
CLN3-225ENST00000566824 GLP2RO95838 553 aa21.1■□□□□ 0.97
CLN3-225ENST00000566824 PSMC2P35998 433 aaKnown RBP21.1■□□□□ 0.97
CLN3-225ENST00000566824 PAK1Q13153 545 aa21.1■□□□□ 0.97
CLN3-225ENST00000566824 KIAA1841Q6NSI8 718 aa21.1■□□□□ 0.97
CLN3-225ENST00000566824 CAVIN1Q6NZI2 390 aaKnown RBP21.1■□□□□ 0.97
CLN3-225ENST00000566824 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.1■□□□□ 0.97
CLN3-225ENST00000566824 GLYCTKQ8IVS8 523 aa21.1■□□□□ 0.97
CLN3-225ENST00000566824 TMC2Q8TDI7 906 aa21.1■□□□□ 0.97
CLN3-225ENST00000566824 ANKRD36BP1Q96IX9 119 aa21.1■□□□□ 0.97
CLN3-225ENST00000566824 ITGA11Q9UKX5 1188 aa21.1■□□□□ 0.97
CLN3-225ENST00000566824 M0QZQ0 153 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 MAPK13O15264 365 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 TEX28O15482 410 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 TNNC2P02585 160 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 KRT19P08727 400 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 PPP1R2P41236 205 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 VAMP7P51809 220 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 FKBP3Q00688 224 aaKnown RBP21.09■□□□□ 0.97
CLN3-225ENST00000566824 DLX2Q07687 328 aaPredicted RBP21.09■□□□□ 0.97
CLN3-225ENST00000566824 PPP3CAQ08209 521 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 COL19A1Q14993 1142 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 SKIV2LQ15477 1246 aaKnown RBP21.09■□□□□ 0.97
CLN3-225ENST00000566824 TDRD10Q5VZ19 366 aaKnown RBP21.09■□□□□ 0.97
CLN3-225ENST00000566824 LLGL2Q6P1M3 1020 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 PIK3R5Q8WYR1 880 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 SENP8Q96LD8 212 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 CLSTN3Q9BQT9 956 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 RXFP1Q9HBX9 757 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 PCDHB8Q9UN66 801 aa21.09■□□□□ 0.97
CLN3-225ENST00000566824 SPTBN5Q9NRC6 3674 aaKnown RBP21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms