RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 CPSF3Q9UKF6 684 aaKnown RBP11.79□□□□□ -0.52
VPS39-208ENST00000564994 POLIQ9UNA4 740 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 MORC2Q9Y6X9 1032 aaPredicted RBP11.79□□□□□ -0.52
VPS39-208ENST00000564994 TCHHQ07283 1943 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 PPEF2O14830 753 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 PPP1R37O75864 691 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 SEC24AO95486 1093 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 CFHP08603 1231 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 CYP3A5P20815 502 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 PTPN5P54829 565 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 ARPP19P56211 112 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 PPP2R3AQ06190 1150 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 KYAT1Q16773 422 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 CTXN3Q4LDR2 81 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 RRAGBQ5VZM2 374 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 POTEHQ6S545 545 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 ZNF720Q7Z2F6 126 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 KRI1Q8N9T8 703 aaKnown RBP11.78□□□□□ -0.52
VPS39-208ENST00000564994 FGF13Q92913 245 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 FGF14Q92915 247 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 NXPE3Q969Y0 559 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 PRRX2Q99811 253 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 MSTO1Q9BUK6 570 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 STRA6Q9BX79 667 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 ZSCAN16Q9H4T2 348 aaPredicted RBP11.78□□□□□ -0.52
VPS39-208ENST00000564994 RPF1Q9H9Y2 349 aaKnown RBP11.78□□□□□ -0.52
VPS39-208ENST00000564994 CDH7Q9ULB5 785 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 UBQLN1Q9UMX0 589 aaKnown RBP11.78□□□□□ -0.52
VPS39-208ENST00000564994 PCDHB8Q9UN66 801 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 STYXL1Q9Y6J8 313 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 NUMBLQ9Y6R0 609 aa11.78□□□□□ -0.52
VPS39-208ENST00000564994 ZFHX2Q9C0A1 2572 aaPredicted RBP11.77□□□□□ -0.52
VPS39-208ENST00000564994 ARHGEF37A1IGU5 675 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 KRBA1A5PL33 1030 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 H7C4K7 107 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 M0QZQ0 153 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 PI15O43692 258 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 XYLBO75191 536 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 SRFP11831 508 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 ATF2P15336 505 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 NASPP49321 788 aaPredicted RBP11.77□□□□□ -0.53
VPS39-208ENST00000564994 AARSP49588 968 aaKnown RBP eCLIP11.77□□□□□ -0.53
VPS39-208ENST00000564994 ACOT2P49753 483 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 MRE11P49959 708 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 KCNA1Q09470 495 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 SLC5A9Q2M3M2 681 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 SPATA1Q5VX52 437 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 ASTLQ6HA08 431 aaPredicted RBP11.77□□□□□ -0.53
VPS39-208ENST00000564994 JADE1Q6IE81 842 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 PARM1Q6UWI2 310 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 RTL10Q7L3V2 364 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 SIX5Q8N196 739 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 FLCNQ8NFG4 579 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 SNX21Q969T3 373 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 FAM212AQ96EL1 285 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 PANK2Q9BZ23 570 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 MFSD1Q9H3U5 465 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 FBXL21Q9UKT6 434 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 TIMM13Q9Y5L4 95 aaPredicted RBP11.77□□□□□ -0.53
VPS39-208ENST00000564994 ZFP37Q9Y6Q3 630 aaPredicted RBP11.77□□□□□ -0.53
VPS39-208ENST00000564994 COL4A3Q01955 1670 aa11.77□□□□□ -0.53
VPS39-208ENST00000564994 NRG2O14511 850 aaPredicted RBP11.76□□□□□ -0.53
VPS39-208ENST00000564994 SPTLC1O15269 473 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 GALR2O43603 387 aaPredicted RBP11.76□□□□□ -0.53
VPS39-208ENST00000564994 VNN2O95498 520 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 NFICP08651 508 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 ADSSP30520 456 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 ABCD1P33897 745 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 TXLNAP40222 546 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 STAT6P42226 847 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 CLCN5P51795 746 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 CASP5P51878 434 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 PABPC1LQ4VXU2 614 aaKnown RBP11.76□□□□□ -0.53
VPS39-208ENST00000564994 ADALQ6DHV7 355 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 ZNF280DQ6N043 979 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 CRELD2Q6UXH1 353 aaPredicted RBP11.76□□□□□ -0.53
VPS39-208ENST00000564994 CCDC73Q6ZRK6 1079 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 SV2BQ7L1I2 683 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 NPAS3Q8IXF0 933 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 TCEAL8Q8IYN2 117 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 LINC00301Q8NCQ3 95 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 APPL2Q8NEU8 664 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 GPR152Q8TDT2 470 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 ING5Q8WYH8 240 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 FGFBP2Q9BYJ0 223 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 CYP4F11Q9HBI6 524 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 FAM86C1Q9NVL1 165 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 TBC1D7Q9P0N9 293 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 WNT16Q9UBV4 365 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 CA14Q9ULX7 337 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 INSL5Q9Y5Q6 135 aa11.76□□□□□ -0.53
VPS39-208ENST00000564994 WDR87Q6ZQQ6 2873 aa11.75□□□□□ -0.53
VPS39-208ENST00000564994 FRMD3A2A2Y4 597 aa11.75□□□□□ -0.53
VPS39-208ENST00000564994 H0Y858 1186 aa11.75□□□□□ -0.53
VPS39-208ENST00000564994 PIRO00625 290 aa11.75□□□□□ -0.53
VPS39-208ENST00000564994 PRRG1O14668 218 aa11.75□□□□□ -0.53
VPS39-208ENST00000564994 OAZ2O95190 189 aa11.75□□□□□ -0.53
VPS39-208ENST00000564994 RHOP08100 348 aa11.75□□□□□ -0.53
VPS39-208ENST00000564994 OR4Q2P0C623 313 aa11.75□□□□□ -0.53
VPS39-208ENST00000564994 AOC1P19801 751 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms