RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 NRLP54845 237 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 FGD1P98174 961 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 SSRP1Q08945 709 aaKnown RBP11.44□□□□□ -0.58
SF3B3-204ENST00000563739 NR5A1Q13285 461 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 PLA2G2CQ5R387 149 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 STXBP5Q5T5C0 1151 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 GALNT17Q6IS24 598 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 PDXDC1Q6P996 788 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 ALKAL1Q6UXT8 129 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 PIK3AP1Q6ZUJ8 805 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 OTUD6AQ7L8S5 288 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 LONP2Q86WA8 852 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 HACE1Q8IYU2 909 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 FAM177A1Q8N128 213 aaPredicted RBP11.44□□□□□ -0.58
SF3B3-204ENST00000563739 ZNF461Q8TAF7 563 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 SMARCD2Q92925 531 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 KIFC3Q9BVG8 833 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 TRMT61BQ9BVS5 477 aaKnown RBP11.44□□□□□ -0.58
SF3B3-204ENST00000563739 DNAJC25Q9H1X3 360 aa11.44□□□□□ -0.58
SF3B3-204ENST00000563739 POLR3BQ9NW08 1133 aaPredicted RBP11.44□□□□□ -0.58
SF3B3-204ENST00000563739 NAV2Q8IVL1 2488 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 SLC38A8A6NNN8 435 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 C1QTNF9BB2RNN3 333 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 N4BP3O15049 544 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 CDC45O75419 566 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 MED24O75448 989 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 B3GAT3O94766 335 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 EPN2O95208 641 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 PROS1P07225 676 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 C1QTNF9P0C862 333 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 ATF2P15336 505 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 PSMC3P17980 439 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 RAP1GAPP47736 663 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 FCHO2Q0JRZ9 810 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 CCINQ13939 588 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 TEAD2Q15562 447 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 HEATR6Q6AI08 1181 aaKnown RBP11.43□□□□□ -0.58
SF3B3-204ENST00000563739 MAEAQ7L5Y9 396 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 TAS1R3Q7RTX0 852 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.43□□□□□ -0.58
SF3B3-204ENST00000563739 WDR5BQ86VZ2 330 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 DEPDC1BQ8WUY9 529 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 MTMR9Q96QG7 549 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 SLKQ9H2G2 1235 aaPredicted RBP11.43□□□□□ -0.58
SF3B3-204ENST00000563739 TMEM60Q9H2L4 133 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 ZSWIM6Q9HCJ5 1215 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 ZFP14Q9HCL3 533 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 FBXL5Q9UKA1 691 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 GDAQ9Y2T3 454 aa11.43□□□□□ -0.58
SF3B3-204ENST00000563739 STK36Q9NRP7 1315 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 SMIM28A0A1B0GU29 152 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 MYBPHLA2RUH7 354 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 HEPACAM2A8MVW5 462 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 ACKR2O00590 384 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 GIPC1O14908 333 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 EXTL3O43909 919 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 TOP3BO95985 862 aaKnown RBP11.42□□□□□ -0.58
SF3B3-204ENST00000563739 FDPSP14324 419 aaKnown RBP11.42□□□□□ -0.58
SF3B3-204ENST00000563739 HOXA6P31267 233 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 CTHP32929 405 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 SCRN1Q12765 414 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 TCEAL6Q6IPX3 200 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 ANKS3Q6ZW76 656 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 MFSD6LQ8IWD5 586 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 BEST2Q8NFU1 509 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 ZSCAN18Q8TBC5 510 aaPredicted RBP11.42□□□□□ -0.58
SF3B3-204ENST00000563739 IRF7Q92985 503 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 TCEAL3Q969E4 200 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 ZNF274Q96GC6 653 aaPredicted RBP11.42□□□□□ -0.58
SF3B3-204ENST00000563739 CHAMP1Q96JM3 812 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 POLD4Q9HCU8 107 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 RAB23Q9ULC3 237 aa11.42□□□□□ -0.58
SF3B3-204ENST00000563739 CCDC194A0A1B0GVG4 234 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 PRAMEF12O95522 483 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 LRG1P02750 347 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 PXNP49023 591 aaPredicted RBP11.41□□□□□ -0.58
SF3B3-204ENST00000563739 MLLT6P55198 1093 aaPredicted RBP11.41□□□□□ -0.58
SF3B3-204ENST00000563739 TWF1Q12792 350 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 STK3Q13188 491 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 PRPF4BQ13523 1007 aaKnown RBP11.41□□□□□ -0.58
SF3B3-204ENST00000563739 STPG1Q5TH74 334 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 RNF19BQ6ZMZ0 732 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 RUFY3Q7L099 469 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 KBTBD6Q86V97 674 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 TRIM22Q8IYM9 498 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 RIN3Q8TB24 985 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 C18orf25Q96B23 403 aaPredicted RBP11.41□□□□□ -0.58
SF3B3-204ENST00000563739 ZFYVE19Q96K21 471 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 CDT1Q9H211 546 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 ARRDC1-AS1Q9H2J1 176 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 CYP4F11Q9HBI6 524 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 PTPRHQ9HD43 1115 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 YIPF1Q9Y548 306 aa11.41□□□□□ -0.58
SF3B3-204ENST00000563739 SPECC1L-ADORA2AF8WAN1 911 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 PODXLO00592 558 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 KCNK5O95279 499 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 NEFLP07196 543 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 ZNF806P0C7X5 589 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 CNR2P34972 360 aa11.4□□□□□ -0.58
SF3B3-204ENST00000563739 NCBP1Q09161 790 aaKnown RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms