RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 AGAP1Q9UPQ3 857 aa17.88■□□□□ 0.45
VPS4A-202ENST00000562754 TNRC18O15417 2968 aaPredicted RBP17.88■□□□□ 0.45
VPS4A-202ENST00000562754 PIRO00625 290 aa17.87■□□□□ 0.45
VPS4A-202ENST00000562754 SLC9A1P19634 815 aa17.87■□□□□ 0.45
VPS4A-202ENST00000562754 MRE11P49959 708 aa17.87■□□□□ 0.45
VPS4A-202ENST00000562754 APBA1Q02410 837 aa17.87■□□□□ 0.45
VPS4A-202ENST00000562754 EXOC3L4Q17RC7 722 aa17.87■□□□□ 0.45
VPS4A-202ENST00000562754 C3orf58Q8NDZ4 430 aa17.87■□□□□ 0.45
VPS4A-202ENST00000562754 CWH43Q9H720 699 aa17.87■□□□□ 0.45
VPS4A-202ENST00000562754 SIX2Q9NPC8 291 aa17.87■□□□□ 0.45
VPS4A-202ENST00000562754 RAB20Q9NX57 234 aa17.87■□□□□ 0.45
VPS4A-202ENST00000562754 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.87■□□□□ 0.45
VPS4A-202ENST00000562754 MRPL42Q9Y6G3 142 aaKnown RBP17.87■□□□□ 0.45
VPS4A-202ENST00000562754 A0A1W2PQC6 194 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 F8W810 466 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 PODXLO00592 558 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 ZC3H11AO75152 810 aaKnown RBP eCLIP17.86■□□□□ 0.45
VPS4A-202ENST00000562754 ASS1P00966 412 aaKnown RBP17.86■□□□□ 0.45
VPS4A-202ENST00000562754 PON1P27169 355 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 SLC11A1P49279 550 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 CLCNKBP51801 687 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 RBP5P82980 135 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 TRPC3Q13507 836 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 BTG3Q14201 252 aaPredicted RBP17.86■□□□□ 0.45
VPS4A-202ENST00000562754 UPP1Q16831 310 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 SPOPLQ6IQ16 392 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 TRIM65Q6PJ69 517 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 CD300LGQ6UXG3 332 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 LRRC52Q8N7C0 313 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 EHBP1Q8NDI1 1231 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 SP7Q8TDD2 431 aaPredicted RBP17.86■□□□□ 0.45
VPS4A-202ENST00000562754 UROC1Q96N76 676 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 ZBED2Q9BTP6 218 aa17.86■□□□□ 0.45
VPS4A-202ENST00000562754 LSM14BQ9BX40 385 aaKnown RBP17.86■□□□□ 0.45
VPS4A-202ENST00000562754 APOBEC3GQ9HC16 384 aaKnown RBP17.86■□□□□ 0.45
VPS4A-202ENST00000562754 LCHNA4D1U4 455 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 GRXCR1A8MXD5 290 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 EPHB6O15197 1021 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 SPTLC1O15269 473 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 ADCY5O95622 1261 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 TPM3P06753 285 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 RPL9P32969 192 aaKnown RBP17.85■□□□□ 0.45
VPS4A-202ENST00000562754 BMP8BP34820 402 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 TSC2P49815 1807 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 RABGGTBP53611 331 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 NOP14P78316 857 aaKnown RBP17.85■□□□□ 0.45
VPS4A-202ENST00000562754 MLLT1Q03111 559 aaPredicted RBP17.85■□□□□ 0.45
VPS4A-202ENST00000562754 CETN1Q12798 172 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 ZNF699Q32M78 642 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 ARHGEF19Q8IW93 802 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 DDX27Q96GQ7 796 aaKnown RBP17.85■□□□□ 0.45
VPS4A-202ENST00000562754 MRFAP1L1Q96HT8 127 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 HPDLQ96IR7 371 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 FAM193BQ96PV7 902 aaPredicted RBP17.85■□□□□ 0.45
VPS4A-202ENST00000562754 GANQ9H2C0 597 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 PRG3Q9Y2Y8 225 aaPredicted RBP17.85■□□□□ 0.45
VPS4A-202ENST00000562754 INSL6Q9Y581 213 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 NUB1Q9Y5A7 615 aa17.85■□□□□ 0.45
VPS4A-202ENST00000562754 NLRC5Q86WI3 1866 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 TLL1O43897 1013 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 NOL4O94818 638 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 KIF4AO95239 1232 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 STAU1O95793 577 aaKnown RBP17.84■□□□□ 0.45
VPS4A-202ENST00000562754 ITGB1P05556 798 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 LINC00271P0C7V0 271 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 ATICP31939 592 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 PBX3P40426 434 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 OR1G1P47890 313 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 LRMPQ12912 555 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 GJB7Q6PEY0 223 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 VSTM4Q8IW00 320 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 TATDN2Q93075 761 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 ZNF560Q96MR9 790 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 RAD9AQ99638 391 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 TMEM175Q9BSA9 504 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 PRO3102Q9H379 93 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 VRTNQ9H8Y1 702 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 MARCH5Q9NX47 278 aa17.84■□□□□ 0.45
VPS4A-202ENST00000562754 AJAP1Q9UKB5 411 aaPredicted RBP17.84■□□□□ 0.45
VPS4A-202ENST00000562754 TMEM189-UBE2V1I3L0A0 370 aa17.83■□□□□ 0.44
VPS4A-202ENST00000562754 NRP1O14786 923 aa17.83■□□□□ 0.44
VPS4A-202ENST00000562754 GALTP07902 379 aa17.83■□□□□ 0.44
VPS4A-202ENST00000562754 TAF6P49848 677 aa17.83■□□□□ 0.44
VPS4A-202ENST00000562754 BCAR1P56945 870 aa17.83■□□□□ 0.44
VPS4A-202ENST00000562754 SGSM1Q2NKQ1 1148 aa17.83■□□□□ 0.44
VPS4A-202ENST00000562754 PHLDB3Q6NSJ2 640 aa17.83■□□□□ 0.44
VPS4A-202ENST00000562754 TMEM173Q86WV6 379 aaPredicted RBP17.83■□□□□ 0.44
VPS4A-202ENST00000562754 HASPINQ8TF76 798 aa17.83■□□□□ 0.44
VPS4A-202ENST00000562754 BCL7CQ8WUZ0 217 aaPredicted RBP17.83■□□□□ 0.44
VPS4A-202ENST00000562754 TAF4BQ92750 862 aa17.83■□□□□ 0.44
VPS4A-202ENST00000562754 PCMTD1Q96MG8 357 aaPredicted RBP17.83■□□□□ 0.44
VPS4A-202ENST00000562754 NT5C1BQ96P26 610 aa17.83■□□□□ 0.44
VPS4A-202ENST00000562754 PLCB1Q9NQ66 1216 aa17.83■□□□□ 0.44
VPS4A-202ENST00000562754 FAM207AQ9NSI2 230 aaPredicted RBP17.83■□□□□ 0.44
VPS4A-202ENST00000562754 POLIQ9UNA4 740 aa17.83■□□□□ 0.44
VPS4A-202ENST00000562754 ITIH6Q6UXX5 1313 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 B3GAT3O94766 335 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 ARHGEF15O94989 841 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 MYOGP15173 224 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 PNPLA4P41247 253 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms