RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PCSK9Q8NBP7 692 aaKnown RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 LNX1Q8TBB1 728 aaPredicted RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 SLC35G2Q8TBE7 412 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 SPATA18Q8TC71 538 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 CCHCR1Q8TD31 782 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 WHAMMQ8TF30 809 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 ZNF653Q96CK0 615 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 KREMEN1Q96MU8 473 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 PTPN18Q99952 460 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 MTG1Q9BT17 334 aaPredicted RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 FRMD8P1Q9BZ68 369 aaPredicted RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 CDT1Q9H211 546 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 LHX5Q9H2C1 402 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 RNPEPQ9H4A4 650 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 IFT122Q9HBG6 1241 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 PDE11AQ9HCR9 933 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 POLD4Q9HCU8 107 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 CHST12Q9NRB3 414 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 SLC38A7Q9NVC3 462 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 STIM2Q9P246 746 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 TRIM10Q9UDY6 481 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 PUF60Q9UHX1 559 aaKnown RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 PCDHB4Q9Y5E5 795 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 SQORQ9Y6N5 450 aa8.03□□□□□ -1.12
VPS39-204ENST00000561818 V9GYY5 206 aaPredicted RBP8.03□□□□□ -1.12
VPS39-204ENST00000561818 A0A087WZ62 844 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 FAM187AA6NFU0 413 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 TISP43B9A030 160 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 ABLIM1O14639 778 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 KCNK3O14649 394 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 ENC1O14682 589 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 TLR3O15455 904 aaKnown RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 CYP26A1O43174 497 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 DYNC1LI2O43237 492 aaPredicted RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 BUB1O43683 1085 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 SPOPO43791 374 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 HMGCRP04035 888 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 CYP1A1P04798 512 aaPredicted RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 ZNF865P0CJ78 1059 aaPredicted RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 STAG3L1P0CL83 205 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 SETSIPP0DME0 302 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 SMIM10L2AP0DMW4 78 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 SMIM10L2BP0DMW5 78 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 DARSP14868 501 aaKnown RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 CST5P28325 142 aaPredicted RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 HOXC8P31273 242 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 CDH5P33151 784 aaPredicted RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 PSEN2P49810 448 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 RAB27AP51159 221 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 ZNF132P52740 706 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 EPHB4P54760 987 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 RWDD2BP57060 319 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 GJA9P57773 515 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 COPS2P61201 443 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 TFAMQ00059 246 aaKnown RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 FMO1Q01740 532 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 FSCN1Q16658 493 aaKnown RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 SPDYCQ5MJ68 293 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 LRRC38Q5VT99 294 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 FBXO38Q6PIJ6 1188 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 CATSPER4Q7RTX7 472 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 NT5DC3Q86UY8 548 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 UNC93AQ86WB7 457 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 ZDHHC17Q8IUH5 632 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 RBBP8NLQ8NC74 664 aaPredicted RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 ZNF564Q8TBZ8 553 aaPredicted RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 PLEKHO2Q8TD55 490 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 IPO4Q8TEX9 1081 aaKnown RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 FNIP1Q8TF40 1166 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 GRK7Q8WTQ7 553 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 SEMA4DQ92854 862 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 FDXACB1Q9BRP7 624 aaPredicted RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 PARD6BQ9BYG5 372 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 UPF3AQ9H1J1 476 aaKnown RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 PDZD7Q9H5P4 517 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 GPBP1L1Q9HC44 474 aaPredicted RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 ABCB6Q9NP58 842 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 UBN1Q9NPG3 1134 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 CYLDQ9NQC7 956 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 PDGFCQ9NRA1 345 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 IP6K2Q9UHH9 426 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 CPA4Q9UI42 421 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 ABT1Q9ULW3 272 aaKnown RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 UBQLN1Q9UMX0 589 aaKnown RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 UTP11Q9Y3A2 253 aaKnown RBP8.02□□□□□ -1.13
VPS39-204ENST00000561818 DOCK5Q9H7D0 1870 aa8.02□□□□□ -1.13
VPS39-204ENST00000561818 IGF2BP3O00425 579 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS39-204ENST00000561818 PODXLO00592 558 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 GPR182O15218 404 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 FANCGO15287 622 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 SEPT4O43236 478 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 SORBS3O60504 671 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 BUB1BO60566 1050 aaPredicted RBP8.01□□□□□ -1.13
VPS39-204ENST00000561818 TSPAN1O60635 241 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 IGHA2P01877 340 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 ERBB2P04626 1255 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 ZNF286BP0CG31 522 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 CYP2C9P11712 490 aa8.01□□□□□ -1.13
VPS39-204ENST00000561818 HARSP12081 509 aaKnown RBP8.01□□□□□ -1.13
VPS39-204ENST00000561818 UNGP13051 313 aaPredicted RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms