RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 C22orf31O95567 290 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 NEFHP12036 1026 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 DARSP14868 501 aaKnown RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 CTGFP29279 349 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 RDXP35241 583 aaKnown RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 CLCN1P35523 988 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 SARSP49591 514 aaKnown RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 TAF6P49848 677 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 MTM1Q13496 603 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 SEL1L2Q5TEA6 688 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 CCDC62Q6P9F0 684 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 LRRC8DQ7L1W4 858 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 MIB1Q86YT6 1006 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 SPATA2LQ8IUW3 424 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 ARHGEF19Q8IW93 802 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 CCDC117Q8IWD4 279 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 OTUD6BQ8N6M0 293 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 C1orf131Q8NDD1 294 aaKnown RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 EHBP1Q8NDI1 1231 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 PARD3BQ8TEW8 1205 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 SLC20A1Q8WUM9 679 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 SLC35C1Q96A29 364 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 BTBD6Q96KE9 485 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 ZNF512Q96ME7 567 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 TMEM8AQ9HCN3 771 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 FAM105AQ9NUU6 356 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 TUBGCP4Q9UGJ1 667 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 UBQLN1Q9UMX0 589 aaKnown RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 ADAMTS5Q9UNA0 930 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 PTPN22Q9Y2R2 807 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 DICER1Q9UPY3 1922 aaKnown RBP5.81□□□□□ -1.48
VPS13C-209ENST00000560637 SSC5DA1L4H1 1573 aa5.81□□□□□ -1.48
VPS13C-209ENST00000560637 CTAGE15A4D2H0 777 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 MEIS3P2A8K0S8 358 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 PI4K2BG5E9Z4 385 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 TRIM66O15016 1216 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 ALDH2P05091 517 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 CTAGE8P0CG41 777 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 MAPTP10636 758 aaKnown RBP5.8□□□□□ -1.48
VPS13C-209ENST00000560637 CSF2RAP15509 400 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 RPL17P18621 184 aaKnown RBP5.8□□□□□ -1.48
VPS13C-209ENST00000560637 PON1P27169 355 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 RTP1P59025 263 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 BPIFB4P59827 614 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 ITKQ08881 620 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 PPP1R7Q15435 360 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 TRIP13Q15645 432 aaPredicted RBP5.8□□□□□ -1.48
VPS13C-209ENST00000560637 SGSM1Q2NKQ1 1148 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 SGO2Q562F6 1265 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 SYCP2LQ5T4T6 812 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 SRGAP1Q7Z6B7 1085 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 CTAGE6Q86UF2 777 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 CTAGE4Q8IX94 777 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 STKLD1Q8NE28 680 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 ZNF507Q8TCN5 953 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 RIN2Q8WYP3 895 aaPredicted RBP5.8□□□□□ -1.48
VPS13C-209ENST00000560637 ACO2Q99798 780 aaKnown RBP5.8□□□□□ -1.48
VPS13C-209ENST00000560637 CEP72Q9P209 647 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 NR2E3Q9Y5X4 410 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 PHLPP2Q6ZVD8 1323 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 A0A1B0GTH6 734 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 A6NJR5 290 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 EDIL3O43854 480 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 CREB3O43889 395 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 CDC42EP1Q00587 391 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 CTXN3Q4LDR2 81 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 SLC47A2Q86VL8 602 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 TMEM35BQ8NCS4 154 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 CCNYQ8ND76 341 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 TRPV1Q8NER1 839 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 UHMK1Q8TAS1 419 aaKnown RBP5.8□□□□□ -1.48
VPS13C-209ENST00000560637 AUTS2Q8WXX7 1259 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 C16orf70Q9BSU1 422 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 FUCA2Q9BTY2 467 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 NIF3L1Q9GZT8 377 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 SMYD3Q9H7B4 428 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 SMPD4Q9NXE4 827 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 LIMA1Q9UHB6 759 aaKnown RBP5.8□□□□□ -1.48
VPS13C-209ENST00000560637 AMFRQ9UKV5 643 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 SLC45A1Q9Y2W3 748 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 IPPQ9Y573 584 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 TIAM2Q8IVF5 1701 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 UMODL1Q5DID0 1318 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 SMCHD1A6NHR9 2005 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 GOLGA6L10A0A0M3HER8 536 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 TRAPPC3O43617 180 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 TLL1O43897 1013 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 B4GALT4O60513 344 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 CABYRO75952 493 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 CST3P01034 146 aaPredicted RBP5.8□□□□□ -1.48
VPS13C-209ENST00000560637 SERPING1P05155 500 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 MMEP08473 750 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 PSMA2P25787 234 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 SOX5P35711 763 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 GGCXP38435 758 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 NR1I3Q14994 352 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 SMTNL2Q2TAL5 461 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 MDH1BQ5I0G3 518 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 FBXO47Q5MNV8 452 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 KLHDC7AQ5VTJ3 777 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms