RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ENOX2Q16206 610 aaKnown RBP11.13□□□□□ -0.63
LDLR-214ENST00000560628 SLC39A4Q6P5W5 647 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 APPL2Q8NEU8 664 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 LARP4BQ92615 738 aaKnown RBP11.13□□□□□ -0.63
LDLR-214ENST00000560628 MCRS1Q96EZ8 462 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 FIZ1Q96SL8 496 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 MSTO1Q9BUK6 570 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 PANK2Q9BZ23 570 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 IRF2BPLQ9H1B7 796 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 IKZF4Q9H2S9 585 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 RPF1Q9H9Y2 349 aaKnown RBP11.13□□□□□ -0.63
LDLR-214ENST00000560628 FBXO2Q9UK22 296 aaPredicted RBP11.13□□□□□ -0.63
LDLR-214ENST00000560628 PCDHB8Q9UN66 801 aa11.13□□□□□ -0.63
LDLR-214ENST00000560628 MRPS23Q9Y3D9 190 aaKnown RBP11.13□□□□□ -0.63
LDLR-214ENST00000560628 ZFP37Q9Y6Q3 630 aaPredicted RBP11.13□□□□□ -0.63
LDLR-214ENST00000560628 DOCK8Q8NF50 2099 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 A0A0B4J269 797 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 ARHGEF37A1IGU5 675 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 FAM189A1O60320 539 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 PIGRP01833 764 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 LRG1P02750 347 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 ATF2P15336 505 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 PTPN2P17706 415 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 LRPAP1P30533 357 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 ACOT2P49753 483 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 PPP2R3AQ06190 1150 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 ADCY1Q08828 1119 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 KYAT1Q16773 422 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 SLC5A9Q2M3M2 681 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 RRAGBQ5VZM2 374 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 DSTYKQ6XUX3 929 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 RTL10Q7L3V2 364 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 NPAS3Q8IXF0 933 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 KRI1Q8N9T8 703 aaKnown RBP11.12□□□□□ -0.63
LDLR-214ENST00000560628 DTWD2Q8NBA8 298 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 KXD1Q9BQD3 176 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 RTP3Q9BQQ7 232 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 CORO1BQ9BR76 489 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 BACH2Q9BYV9 841 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 TBC1D17Q9HA65 648 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 TBC1D7Q9P0N9 293 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 CCDC39Q9UFE4 941 aa11.12□□□□□ -0.63
LDLR-214ENST00000560628 UBQLN1Q9UMX0 589 aaKnown RBP11.12□□□□□ -0.63
LDLR-214ENST00000560628 SRPRBQ9Y5M8 271 aaKnown RBP11.12□□□□□ -0.63
LDLR-214ENST00000560628 PIEZO1Q92508 2521 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 MYH11P35749 1972 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 MYMKA6NI61 221 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 PPEF2O14830 753 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 DCNP07585 359 aaKnown RBP11.11□□□□□ -0.63
LDLR-214ENST00000560628 POU2F2P09086 479 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 OR4Q2P0C623 313 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 CPB1P15086 417 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 CYP3A5P20815 502 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 GTF2BQ00403 316 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 SNW1Q13573 536 aaKnown RBP11.11□□□□□ -0.63
LDLR-214ENST00000560628 TPGS2Q68CL5 300 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 ADALQ6DHV7 355 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 JADE1Q6IE81 842 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 ZNF280DQ6N043 979 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 POTEHQ6S545 545 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 RNF19BQ6ZMZ0 732 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 ZNF720Q7Z2F6 126 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 SFR1Q86XK3 245 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 TCEAL8Q8IYN2 117 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 HS6ST3Q8IZP7 471 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 KCNN1Q92952 543 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 TCEAL4Q96EI5 215 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 PGLYRP2Q96PD5 576 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 USP28Q96RU2 1077 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 PLA2G2FQ9BZM2 168 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 ARHGEF3Q9NR81 526 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 SLC2A4RGQ9NR83 387 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 CPSF3Q9UKF6 684 aaKnown RBP11.11□□□□□ -0.63
LDLR-214ENST00000560628 KCNH3Q9ULD8 1083 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 MTMR6Q9Y217 621 aa11.11□□□□□ -0.63
LDLR-214ENST00000560628 CITO14578 2027 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 M0QZQ0 153 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 NRG2O14511 850 aaPredicted RBP11.1□□□□□ -0.63
LDLR-214ENST00000560628 XPOTO43592 962 aaKnown RBP11.1□□□□□ -0.63
LDLR-214ENST00000560628 GFRA3O60609 400 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 OAZ2O95190 189 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 ADRB2P07550 413 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 NFICP08651 508 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 CEBPBP17676 345 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 SCP2P22307 547 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 CDR1P51861 262 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 YWHAHQ04917 246 aaPredicted RBP11.1□□□□□ -0.63
LDLR-214ENST00000560628 TWF1Q12792 350 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 SLC44A4Q53GD3 710 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 SPATA1Q5VX52 437 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 MTSS1LQ765P7 747 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 SV2BQ7L1I2 683 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 USP37Q86T82 979 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 MAP4K3Q8IVH8 894 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 CCDC105Q8IYK2 499 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 BEST2Q8NFU1 509 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 INTS4Q96HW7 963 aaKnown RBP11.1□□□□□ -0.63
LDLR-214ENST00000560628 ZNF512Q96ME7 567 aaPredicted RBP11.1□□□□□ -0.63
LDLR-214ENST00000560628 CEP72Q9P209 647 aa11.1□□□□□ -0.63
LDLR-214ENST00000560628 TFIP11Q9UBB9 837 aaKnown RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms