RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 CETPP11597 493 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 MYCLP12524 364 aaPredicted RBP12.04□□□□□ -0.48
CUX1-218ENST00000560541 BRAFP15056 766 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 RRM1P23921 792 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 CHRNA5P30532 468 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 MYBPC2Q14324 1141 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 XKR9Q5GH70 373 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 TNFAIP8L3Q5GJ75 292 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 TMEM110Q86TL2 294 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 C9orf72Q96LT7 481 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 LRRC19Q9H756 370 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 TRIM33Q9UPN9 1127 aa12.04□□□□□ -0.48
CUX1-218ENST00000560541 AFF2P51816 1311 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 ATRNL1Q5VV63 1379 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 PDHA1P08559 390 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 TUBP50607 506 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 GTF2BQ00403 316 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 MYBPC3Q14896 1274 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 MFSD5Q6N075 450 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 TRMT10CQ7L0Y3 403 aaKnown RBP12.03□□□□□ -0.48
CUX1-218ENST00000560541 PASD1Q8IV76 773 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 SRRM1Q8IYB3 904 aaKnown RBP12.03□□□□□ -0.48
CUX1-218ENST00000560541 AGAP11Q8TF27 550 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 PRCCQ92733 491 aaPredicted RBP12.03□□□□□ -0.48
CUX1-218ENST00000560541 NT5C1BQ96P26 610 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 TMEM109Q9BVC6 243 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 MRIQ9BWK5 157 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 ECT2Q9H8V3 914 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 KLHL11Q9NVR0 708 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 A8MUI8 341 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 MUTP22033 750 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 BLMHQ13867 455 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 TCEAL1Q15170 157 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 SLC27A3Q5K4L6 730 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 HP1BP3Q5SSJ5 553 aaPredicted RBP12.03□□□□□ -0.48
CUX1-218ENST00000560541 MTHFD1LQ6UB35 978 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 GALNT15Q8N3T1 639 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 DDX1Q92499 740 aaKnown RBP12.03□□□□□ -0.48
CUX1-218ENST00000560541 ADAM33Q9BZ11 813 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 CCDC134Q9H6E4 229 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 EBF2Q9HAK2 575 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 PREBQ9HCU5 417 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 RAB20Q9NX57 234 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 UVRAGQ9P2Y5 699 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 TCEAL9Q9UHQ7 104 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 STK38LQ9Y2H1 464 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 USP15Q9Y4E8 981 aaPredicted RBP12.03□□□□□ -0.48
CUX1-218ENST00000560541 LTBP4Q8N2S1 1624 aa12.03□□□□□ -0.48
CUX1-218ENST00000560541 DENND3A2RUS2 1198 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 CREB3O43889 395 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 SORBS3O60504 671 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 ATP9AO75110 1047 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 ATF2P15336 505 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 MRPS9P82933 396 aaKnown RBP12.02□□□□□ -0.48
CUX1-218ENST00000560541 MTMR1Q13613 665 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 TKFCQ3LXA3 575 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 ACAD10Q6JQN1 1059 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 CYP4F22Q6NT55 531 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 SV2AQ7L0J3 742 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 CROCCP2Q86T23 111 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 NLGN1Q8N2Q7 840 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 FBXL13Q8NEE6 735 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 SNF8Q96H20 258 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 SLX1AQ9BQ83 275 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 TMEM39BQ9GZU3 492 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 USTQ9Y2C2 406 aa12.02□□□□□ -0.48
CUX1-218ENST00000560541 ASTN2O75129 1339 aaPredicted RBP12.02□□□□□ -0.48
CUX1-218ENST00000560541 IGF2BP3O00425 579 aaKnown RBP eCLIP12.02□□□□□ -0.49
CUX1-218ENST00000560541 FSCN2O14926 492 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 GRIN3BO60391 1043 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 GJB6O95452 261 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 TTC4O95801 387 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 RALAP11233 206 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 NCALDP61601 193 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 SP4Q02446 784 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 FAM47EQ6ZV65 393 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 C12orf50Q8NA57 414 aaPredicted RBP12.02□□□□□ -0.49
CUX1-218ENST00000560541 MORC4Q8TE76 937 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 POMGNT1Q8WZA1 660 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 AGO4Q9HCK5 861 aaKnown RBP12.02□□□□□ -0.49
CUX1-218ENST00000560541 TMOD2Q9NZR1 351 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 WHRNQ9P202 907 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 ANAPC5Q9UJX4 755 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 TBX20Q9UMR3 447 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 GSTTP1A0A1W2PQM5 241 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 YDJCA8MPS7 323 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 ZNF24P17028 368 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 IVDP26440 423 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 NPTX2P47972 431 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 RHBDF2Q6PJF5 856 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 CAPN12Q6ZSI9 719 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 C12orf56Q8IXR9 622 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 BSNDQ8WZ55 320 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 MRRFQ96E11 262 aaKnown RBP12.02□□□□□ -0.49
CUX1-218ENST00000560541 RMDN2Q96LZ7 410 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 TGS1Q96RS0 853 aaKnown RBP12.02□□□□□ -0.49
CUX1-218ENST00000560541 ROPN1BQ9BZX4 212 aaPredicted RBP12.02□□□□□ -0.49
CUX1-218ENST00000560541 ROPN1Q9HAT0 212 aaPredicted RBP12.02□□□□□ -0.49
CUX1-218ENST00000560541 NINJ2Q9NZG7 142 aa12.02□□□□□ -0.49
CUX1-218ENST00000560541 NOP53Q9NZM5 478 aaKnown RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms