RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 AGPAT5Q9NUQ2 364 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 FANCLQ9NW38 375 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 FBXL21Q9UKT6 434 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 TBX20Q9UMR3 447 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 DUSP12Q9UNI6 340 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 FRMD4BQ9Y2L6 1034 aa12.81□□□□□ -0.36
LDLR-212ENST00000560467 CARNS1A5YM72 827 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 GOLGA6L6A8MZA4 724 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 C2CD2LO14523 706 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 N4BP1O75113 896 aaKnown RBP12.8□□□□□ -0.36
LDLR-212ENST00000560467 POMCP01189 267 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 PRKCSHP14314 528 aaPredicted RBP12.8□□□□□ -0.36
LDLR-212ENST00000560467 GLRA2P23416 452 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 EEF1GP26641 437 aaKnown RBP12.8□□□□□ -0.36
LDLR-212ENST00000560467 MATR3P43243 847 aaKnown RBP eCLIP12.8□□□□□ -0.36
LDLR-212ENST00000560467 LIG4P49917 911 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 ADAM9Q13443 819 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 MYBPC2Q14324 1141 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 CCDC40Q4G0X9 1142 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 ZC2HC1CQ53FD0 456 aaPredicted RBP12.8□□□□□ -0.36
LDLR-212ENST00000560467 UBXN11Q5T124 520 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 TMEM161BQ8NDZ6 487 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 RSAD2Q8WXG1 361 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 PGBD4Q96DM1 585 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 TCHPQ9BT92 498 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 RSAD1Q9HA92 442 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 MAN1C1Q9NR34 630 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 MARCH5Q9NX47 278 aa12.8□□□□□ -0.36
LDLR-212ENST00000560467 PRG3Q9Y2Y8 225 aaPredicted RBP12.8□□□□□ -0.36
LDLR-212ENST00000560467 MYO10Q9HD67 2058 aa12.79□□□□□ -0.36
LDLR-212ENST00000560467 INO80B-WBP1J3KQ70 363 aa12.79□□□□□ -0.36
LDLR-212ENST00000560467 HNRNPDLO14979 420 aaKnown RBP12.79□□□□□ -0.36
LDLR-212ENST00000560467 KIAA0391O15091 583 aaKnown RBP12.79□□□□□ -0.36
LDLR-212ENST00000560467 EPB41P11171 864 aaKnown RBP12.79□□□□□ -0.36
LDLR-212ENST00000560467 NR2F2P24468 414 aa12.79□□□□□ -0.36
LDLR-212ENST00000560467 HOXA11P31270 313 aaPredicted RBP12.79□□□□□ -0.36
LDLR-212ENST00000560467 MTIF2P46199 727 aaKnown RBP12.79□□□□□ -0.36
LDLR-212ENST00000560467 PCBP1Q15365 356 aaKnown RBP eCLIP12.79□□□□□ -0.36
LDLR-212ENST00000560467 ANGPT1Q15389 498 aa12.79□□□□□ -0.36
LDLR-212ENST00000560467 TTI2Q6NXR4 508 aa12.79□□□□□ -0.36
LDLR-212ENST00000560467 TAS1R1Q7RTX1 841 aa12.79□□□□□ -0.36
LDLR-212ENST00000560467 MRPL10Q7Z7H8 261 aaKnown RBP12.79□□□□□ -0.36
LDLR-212ENST00000560467 DRC7Q8IY82 874 aa12.79□□□□□ -0.36
LDLR-212ENST00000560467 DTWD2Q8NBA8 298 aa12.79□□□□□ -0.36
LDLR-212ENST00000560467 ASAP3Q8TDY4 903 aa12.79□□□□□ -0.36
LDLR-212ENST00000560467 HERC2P3Q9BVR0 1158 aa12.79□□□□□ -0.36
LDLR-212ENST00000560467 MRPL4Q9BYD3 311 aaKnown RBP12.79□□□□□ -0.36
LDLR-212ENST00000560467 NFKBIZQ9BYH8 718 aa12.79□□□□□ -0.36
LDLR-212ENST00000560467 METTL14Q9HCE5 456 aaKnown RBP12.79□□□□□ -0.36
LDLR-212ENST00000560467 MRPL17Q9NRX2 175 aaKnown RBP12.79□□□□□ -0.36
LDLR-212ENST00000560467 PRMT7Q9NVM4 692 aaPredicted RBP12.79□□□□□ -0.36
LDLR-212ENST00000560467 TRAF3IP3Q9Y228 551 aa12.79□□□□□ -0.36
LDLR-212ENST00000560467 FAN1Q9Y2M0 1017 aa12.79□□□□□ -0.36
LDLR-212ENST00000560467 MYH9P35579 1960 aaKnown RBP12.78□□□□□ -0.36
LDLR-212ENST00000560467 CACNA1AO00555 2505 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 KCNJ18B7U540 433 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 F8W810 466 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 PES1O00541 588 aaKnown RBP12.78□□□□□ -0.36
LDLR-212ENST00000560467 NRP1O14786 923 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 TEX28O15482 410 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 EXOC3O60645 756 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 ERLIN2O94905 339 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 NR3C1P04150 777 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 SOD2P04179 222 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 URODP06132 367 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 CFHP08603 1231 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 KRT13P13646 458 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 FOXK2Q01167 660 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 CAPSQ13938 189 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 KCNJ12Q14500 433 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 ARMCX5Q6P1M9 558 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 C15orf39Q6ZRI6 1047 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 SRGAP1Q7Z6B7 1085 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 FILIP1Q7Z7B0 1213 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 FAM193BQ96PV7 902 aaPredicted RBP12.78□□□□□ -0.36
LDLR-212ENST00000560467 TMEM175Q9BSA9 504 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 KIAA1586Q9HCI6 787 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 ARHGAP28Q9P2N2 729 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 CNTNAP2Q9UHC6 1331 aa12.78□□□□□ -0.36
LDLR-212ENST00000560467 GPR179Q6PRD1 2367 aa12.77□□□□□ -0.36
LDLR-212ENST00000560467 KRBA1A5PL33 1030 aa12.77□□□□□ -0.37
LDLR-212ENST00000560467 TRIM49BA6NDI0 452 aa12.77□□□□□ -0.37
LDLR-212ENST00000560467 TULP1O00294 542 aaPredicted RBP12.77□□□□□ -0.37
LDLR-212ENST00000560467 SLC16A3O15427 465 aaKnown RBP12.77□□□□□ -0.37
LDLR-212ENST00000560467 RFPL2O75678 378 aa12.77□□□□□ -0.37
LDLR-212ENST00000560467 ALDH2P05091 517 aa12.77□□□□□ -0.37
LDLR-212ENST00000560467 GBP2P32456 591 aaPredicted RBP12.77□□□□□ -0.37
LDLR-212ENST00000560467 PSMC2P35998 433 aaKnown RBP12.77□□□□□ -0.37
LDLR-212ENST00000560467 CASP5P51878 434 aa12.77□□□□□ -0.37
LDLR-212ENST00000560467 UBASH3AP57075 661 aa12.77□□□□□ -0.37
LDLR-212ENST00000560467 PTENP60484 403 aa12.77□□□□□ -0.37
LDLR-212ENST00000560467 PPP2R3AQ06190 1150 aa12.77□□□□□ -0.37
LDLR-212ENST00000560467 PRPF4BQ13523 1007 aaKnown RBP12.77□□□□□ -0.37
LDLR-212ENST00000560467 NFIL3Q16649 462 aa12.77□□□□□ -0.37
LDLR-212ENST00000560467 TCP11X2Q5H9J9 407 aa12.77□□□□□ -0.37
LDLR-212ENST00000560467 FKBP15Q5T1M5 1219 aa12.77□□□□□ -0.37
LDLR-212ENST00000560467 CEP135Q66GS9 1140 aa12.77□□□□□ -0.37
LDLR-212ENST00000560467 ZPBP2Q6X784 338 aa12.77□□□□□ -0.37
LDLR-212ENST00000560467 MAP4K3Q8IVH8 894 aa12.77□□□□□ -0.37
LDLR-212ENST00000560467 COLGALT2Q8IYK4 626 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms