RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 CDY2AQ9Y6F7 541 aa8.32□□□□□ -1.08
SPG11-213ENST00000558988 CCDC196A0A1B0GTZ2 297 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 TMEM238LA0A1B0GVL6 79 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.31□□□□□ -1.08
SPG11-213ENST00000558988 ZC3H12DA2A288 527 aaKnown RBP8.31□□□□□ -1.08
SPG11-213ENST00000558988 ADAMTS3O15072 1205 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 LPXNO60711 386 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 CAND2O75155 1236 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 REC8O95072 547 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 FOSP01100 380 aaPredicted RBP8.31□□□□□ -1.08
SPG11-213ENST00000558988 SCG2P13521 617 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 CD52P31358 61 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 HSPA4P34932 840 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 STAT5BP51692 787 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 ERVK-21P61565 698 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 ADAM17P78536 824 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 ITGB3BPQ13352 177 aaPredicted RBP8.31□□□□□ -1.08
SPG11-213ENST00000558988 LPIN1Q14693 890 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 PFKFB3Q16875 520 aaPredicted RBP8.31□□□□□ -1.08
SPG11-213ENST00000558988 AAK1Q2M2I8 961 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 GPBAR1Q8TDU6 330 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 PCYT2Q99447 389 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 SLC26A6Q9BXS9 759 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 AGO4Q9HCK5 861 aaKnown RBP8.31□□□□□ -1.08
SPG11-213ENST00000558988 IRAK3Q9Y616 596 aa8.31□□□□□ -1.08
SPG11-213ENST00000558988 FAM86B1E9PN63 330 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 hCG_1984214I3L0E3 225 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 DTNBO60941 627 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 CCNE2O96020 404 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 FAM86B2P0C5J1 330 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 RPS6KB1P23443 525 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 CTNNB1P35222 781 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 SREBF1P36956 1147 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 MRPS6P82932 125 aaKnown RBP8.3□□□□□ -1.08
SPG11-213ENST00000558988 STK3Q13188 491 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 GPM6BQ13491 265 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 PLCB4Q15147 1175 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 TMEM266Q2M3C6 531 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 PAN2Q504Q3 1202 aaKnown RBP8.3□□□□□ -1.08
SPG11-213ENST00000558988 EPC2Q52LR7 807 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 PRR16Q569H4 304 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 MARCH8Q5T0T0 291 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 FAM160B1Q5W0V3 765 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 REXO1Q8N1G1 1221 aaKnown RBP8.3□□□□□ -1.08
SPG11-213ENST00000558988 FIBCD1Q8N539 461 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 ZNF713Q8N859 430 aaPredicted RBP8.3□□□□□ -1.08
SPG11-213ENST00000558988 APBB2Q92870 758 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 TOP1MTQ969P6 601 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 SIGLEC10Q96LC7 697 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 ZNF577Q9BSK1 485 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 UPF3BQ9BZI7 483 aaKnown RBP8.3□□□□□ -1.08
SPG11-213ENST00000558988 C6orf50Q9HD87 102 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 NPHS2Q9NP85 383 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 VPS54Q9P1Q0 977 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 SAMM50Q9Y512 469 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 SIP14410 1827 aa8.3□□□□□ -1.08
SPG11-213ENST00000558988 MBLAC1A4D2B0 266 aaPredicted RBP8.29□□□□□ -1.08
SPG11-213ENST00000558988 RRN3P2A6NIE6 340 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 IPO5O00410 1097 aaKnown RBP8.29□□□□□ -1.08
SPG11-213ENST00000558988 MAFGO15525 162 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 CHMP2AO43633 222 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 LRIG2O94898 1065 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 CBX7O95931 251 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 NPR3P17342 541 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 TNFRSF1AP19438 455 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 KCNA5P22460 613 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 KLRC1P26715 233 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 PSMA5P28066 241 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 NLRP5P59047 1200 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 PAK2Q13177 524 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 BTG3Q14201 252 aaPredicted RBP8.29□□□□□ -1.08
SPG11-213ENST00000558988 PTPROQ16827 1216 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 FBXO47Q5MNV8 452 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 SWSAP1Q6NVH7 229 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 TSHZ1Q6ZSZ6 1077 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 CCDC60Q8IWA6 550 aaPredicted RBP8.29□□□□□ -1.08
SPG11-213ENST00000558988 TMEM192Q8IY95 271 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 SLC16A11Q8NCK7 471 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 CCDC12Q8WUD4 166 aaPredicted RBP8.29□□□□□ -1.08
SPG11-213ENST00000558988 IL17RAQ96F46 866 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 GLT8D2Q9H1C3 349 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 AGO3Q9H9G7 860 aaKnown RBP8.29□□□□□ -1.08
SPG11-213ENST00000558988 ZNF302Q9NR11 478 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 TRPV2Q9Y5S1 764 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 NFASCO94856 1347 aa8.29□□□□□ -1.08
SPG11-213ENST00000558988 LAMA2P24043 3122 aaKnown RBP8.28□□□□□ -1.08
SPG11-213ENST00000558988 NLRC5Q86WI3 1866 aa8.28□□□□□ -1.08
SPG11-213ENST00000558988 H3BQ06 376 aaPredicted RBP8.28□□□□□ -1.08
SPG11-213ENST00000558988 MEIS1O00470 390 aa8.28□□□□□ -1.08
SPG11-213ENST00000558988 CPLX1O14810 134 aa8.28□□□□□ -1.08
SPG11-213ENST00000558988 PRPF3O43395 683 aaKnown RBP8.28□□□□□ -1.08
SPG11-213ENST00000558988 POU3F3P20264 500 aaPredicted RBP8.28□□□□□ -1.08
SPG11-213ENST00000558988 GNA11P29992 359 aa8.28□□□□□ -1.08
SPG11-213ENST00000558988 GATMP50440 423 aa8.28□□□□□ -1.08
SPG11-213ENST00000558988 HTRA4P83105 476 aaPredicted RBP8.28□□□□□ -1.08
SPG11-213ENST00000558988 PPP2R3AQ06190 1150 aa8.28□□□□□ -1.08
SPG11-213ENST00000558988 MGAT3Q09327 533 aa8.28□□□□□ -1.08
SPG11-213ENST00000558988 TCEAL5Q5H9L2 206 aa8.28□□□□□ -1.08
SPG11-213ENST00000558988 MIS18BP1Q6P0N0 1132 aa8.28□□□□□ -1.08
SPG11-213ENST00000558988 MTHFD1LQ6UB35 978 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms