RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 MAML1Q92585 1016 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 PGBD4Q96DM1 585 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 CEP95Q96GE4 821 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 APIPQ96GX9 242 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 CDK5RAP3Q96JB5 506 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 TNIP3Q96KP6 325 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 RPL10LQ96L21 214 aaKnown RBP2.04□□□□□ -2.08
USP3-209ENST00000558925 MRGPRX1Q96LB2 322 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 CCDC138Q96M89 665 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 WRNIP1Q96S55 665 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 UHRF1Q96T88 793 aaPredicted RBP2.04□□□□□ -2.08
USP3-209ENST00000558925 P2RX7Q99572 595 aaKnown RBP2.04□□□□□ -2.08
USP3-209ENST00000558925 MYOCQ99972 504 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 CRB3Q9BUF7 120 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 OSBPL6Q9BZF3 934 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 L2HGDHQ9H9P8 463 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 SLAMF7Q9NQ25 335 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 PNPOQ9NVS9 261 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 STK32BQ9NY57 414 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 GPRC5DQ9NZD1 345 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 GPRC5BQ9NZH0 403 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 CPNE7Q9UBL6 633 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 PCDHA6Q9UN73 950 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 ZDHHC9Q9Y397 364 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 PCDHGB2Q9Y5G2 931 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 A0A1W2PPL8 197 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 CCDC189A1A4V9 331 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 KLRG2A4D1S0 409 aaPredicted RBP2.03□□□□□ -2.08
USP3-209ENST00000558925 POM121BA6NF01 834 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 RHPN2P1A8MT19 583 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 F5H423 210 aaPredicted RBP2.03□□□□□ -2.08
USP3-209ENST00000558925 MYO1FO00160 1098 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 F2RL2O00254 374 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 TBX3O15119 743 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 MAFGO15525 162 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 PHGDHO43175 533 aaKnown RBP2.03□□□□□ -2.08
USP3-209ENST00000558925 PIP5K1CO60331 668 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 MGEA5O60502 916 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 STC2O76061 302 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 MATN4O95460 622 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 CD1AP06126 327 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 SETSIPP0DME0 302 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 BRAFP15056 766 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 TSHRP16473 764 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 BMP5P22003 454 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 PAX3P23760 479 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 PRDX5P30044 214 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 SLC7A1P30825 629 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 SLC6A4P31645 630 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 PTPN7P35236 360 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 KIR2DL3P43628 341 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 BPIFB4P59827 614 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 ATP2C1P98194 919 aaPredicted RBP2.03□□□□□ -2.08
USP3-209ENST00000558925 MEF2AQ02078 507 aaPredicted RBP2.03□□□□□ -2.08
USP3-209ENST00000558925 ZNF543Q08ER8 600 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 IFIT5Q13325 482 aaKnown RBP2.03□□□□□ -2.08
USP3-209ENST00000558925 PMS2P11Q13670 270 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 TRIM14Q14142 442 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 FGL2Q14314 439 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 FAM214AQ32MH5 1076 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 C4orf46Q504U0 113 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 INO80DQ53TQ3 878 aaPredicted RBP2.03□□□□□ -2.08
USP3-209ENST00000558925 C19orf54Q5BKX5 351 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 C3orf38Q5JPI3 329 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 FAM209BQ5JX69 171 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 MFSD14BQ5SR56 506 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 KLHDC7AQ5VTJ3 777 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 PPP4R3AQ6IN85 833 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 Q6ZUG5 572 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 C11orf96Q7Z7L8 435 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 SESTD1Q86VW0 696 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 C1orf210Q8IVY1 113 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 IFNL2Q8IZJ0 200 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 KLHL36Q8N4N3 616 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 ANKRD53Q8N9V6 530 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 PCSK9Q8NBP7 692 aaKnown RBP2.03□□□□□ -2.08
USP3-209ENST00000558925 PLA2G15Q8NCC3 412 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 ANKS1AQ92625 1134 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 PLEKHG4BQ96PX9 1271 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 LRRC37BQ96QE4 947 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 SENP6Q9GZR1 1112 aaPredicted RBP2.03□□□□□ -2.08
USP3-209ENST00000558925 KATNBL1Q9H079 304 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 NUP62CLQ9H1M0 184 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 KCNH6Q9H252 994 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 MRPL46Q9H2W6 279 aaKnown RBP2.03□□□□□ -2.08
USP3-209ENST00000558925 MANSC1Q9H8J5 431 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 CERS4Q9HA82 394 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 BCO1Q9HAY6 547 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 AS3MTQ9HBK9 375 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 PCDH18Q9HCL0 1135 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 LANCL2Q9NS86 450 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 NCDNQ9UBB6 729 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 SLC23A1Q9UHI7 598 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 FEZ2Q9UHY8 353 aaPredicted RBP2.03□□□□□ -2.08
USP3-209ENST00000558925 FBXO10Q9UK96 956 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 ADAM29Q9UKF5 820 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 TPCN1Q9ULQ1 816 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 SLC45A2Q9UMX9 530 aa2.03□□□□□ -2.08
USP3-209ENST00000558925 CTDP1Q9Y5B0 961 aaPredicted RBP2.03□□□□□ -2.08
USP3-209ENST00000558925 SNX13Q9Y5W8 968 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms