RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 WDR92Q96MX6 357 aa7.53□□□□□ -1.2
RTF1-204ENST00000558117 CDX2Q99626 313 aaPredicted RBP7.53□□□□□ -1.2
RTF1-204ENST00000558117 HIST1H2AJQ99878 128 aa7.53□□□□□ -1.2
RTF1-204ENST00000558117 NOL10Q9BSC4 688 aaKnown RBP7.53□□□□□ -1.2
RTF1-204ENST00000558117 SOX7Q9BT81 388 aa7.53□□□□□ -1.2
RTF1-204ENST00000558117 C1QTNF1Q9BXJ1 281 aa7.53□□□□□ -1.2
RTF1-204ENST00000558117 DNAI1Q9UI46 699 aa7.53□□□□□ -1.2
RTF1-204ENST00000558117 MCM8Q9UJA3 840 aa7.53□□□□□ -1.2
RTF1-204ENST00000558117 CDH23Q9H251 3354 aa7.53□□□□□ -1.2
RTF1-204ENST00000558117 DAPK3O43293 454 aa7.52□□□□□ -1.21
RTF1-204ENST00000558117 ADAM17P78536 824 aa7.52□□□□□ -1.21
RTF1-204ENST00000558117 ACAP1Q15027 740 aa7.52□□□□□ -1.21
RTF1-204ENST00000558117 CCDC62Q6P9F0 684 aa7.52□□□□□ -1.21
RTF1-204ENST00000558117 GPATCH3Q96I76 525 aa7.52□□□□□ -1.21
RTF1-204ENST00000558117 COG3Q96JB2 828 aa7.52□□□□□ -1.21
RTF1-204ENST00000558117 OR14A2Q96R54 314 aa7.52□□□□□ -1.21
RTF1-204ENST00000558117 GPR20Q99678 358 aa7.52□□□□□ -1.21
RTF1-204ENST00000558117 LRFN3Q9BTN0 628 aa7.52□□□□□ -1.21
RTF1-204ENST00000558117 PCDH12Q9NPG4 1184 aa7.52□□□□□ -1.21
RTF1-204ENST00000558117 USP18Q9UMW8 372 aa7.52□□□□□ -1.21
RTF1-204ENST00000558117 ZFR2Q9UPR6 939 aaKnown RBP7.52□□□□□ -1.21
RTF1-204ENST00000558117 COL4A3BPQ9Y5P4 624 aa7.52□□□□□ -1.21
RTF1-204ENST00000558117 CACNA1BQ00975 2339 aa7.52□□□□□ -1.21
RTF1-204ENST00000558117 PATE3B3GLJ2 98 aa7.51□□□□□ -1.21
RTF1-204ENST00000558117 UBE2Q2LH0YL09 131 aa7.51□□□□□ -1.21
RTF1-204ENST00000558117 MATN2O00339 956 aa7.51□□□□□ -1.21
RTF1-204ENST00000558117 LPLP06858 475 aa7.51□□□□□ -1.21
RTF1-204ENST00000558117 HNRNPLP14866 589 aaKnown RBP eCLIP7.51□□□□□ -1.21
RTF1-204ENST00000558117 RPS19P39019 145 aaKnown RBP7.51□□□□□ -1.21
RTF1-204ENST00000558117 EIF5P55010 431 aaKnown RBP7.51□□□□□ -1.21
RTF1-204ENST00000558117 TRIM25Q14258 630 aaKnown RBP7.51□□□□□ -1.21
RTF1-204ENST00000558117 PITRM1Q5JRX3 1037 aa7.51□□□□□ -1.21
RTF1-204ENST00000558117 TCTN3Q6NUS6 607 aa7.51□□□□□ -1.21
RTF1-204ENST00000558117 DVL3Q92997 716 aaPredicted RBP7.51□□□□□ -1.21
RTF1-204ENST00000558117 DCPSQ96C86 337 aaKnown RBP7.51□□□□□ -1.21
RTF1-204ENST00000558117 EAF2Q96CJ1 260 aaPredicted RBP7.51□□□□□ -1.21
RTF1-204ENST00000558117 TRIM8Q9BZR9 551 aa7.51□□□□□ -1.21
RTF1-204ENST00000558117 KCNG1Q9UIX4 513 aa7.51□□□□□ -1.21
RTF1-204ENST00000558117 CTDP1Q9Y5B0 961 aaPredicted RBP7.51□□□□□ -1.21
RTF1-204ENST00000558117 RBM8AQ9Y5S9 174 aaKnown RBP7.51□□□□□ -1.21
RTF1-204ENST00000558117 ZDBF2Q9HCK1 2354 aa7.51□□□□□ -1.21
RTF1-204ENST00000558117 UNC79Q9P2D8 2635 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 C2orf78A6NCI8 922 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 GOLGA8AA7E2F4 631 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 GOLGA8BA8MQT2 603 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 PPIP5K2O43314 1243 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 SLC26A4O43511 780 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 ZNF623O75123 536 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 CANXP27824 592 aaKnown RBP7.5□□□□□ -1.21
RTF1-204ENST00000558117 ALDH1B1P30837 517 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 SELENOPP49908 381 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 SCAND1P57086 179 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 MAN2A1Q16706 1144 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 ZNF585AQ6P3V2 769 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 PRPF38AQ8NAV1 312 aaKnown RBP7.5□□□□□ -1.21
RTF1-204ENST00000558117 SHCBP1Q8NEM2 672 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 DNERQ8NFT8 737 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 LMBR1Q8WVP7 490 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 CFHR4Q92496 578 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 CDK5RAP1Q96SZ6 601 aaKnown RBP7.5□□□□□ -1.21
RTF1-204ENST00000558117 PLA2G12BQ9BX93 195 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 NELFAQ9H3P2 528 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.5□□□□□ -1.21
RTF1-204ENST00000558117 C14orf119Q9NWQ9 140 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 SLC5A4Q9NY91 659 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 EDARQ9UNE0 448 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 PCDHB6Q9Y5E3 794 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 NUMBLQ9Y6R0 609 aa7.5□□□□□ -1.21
RTF1-204ENST00000558117 KDM3BQ7LBC6 1761 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 NPHP1O15259 732 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 FOXS1O43638 330 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 RAD17O75943 681 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 ATP2C1P98194 919 aaPredicted RBP7.49□□□□□ -1.21
RTF1-204ENST00000558117 SP3Q02447 781 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 HGFACQ04756 655 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 PTPROQ16827 1216 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 KRT40Q6A162 431 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 SLC41A1Q8IVJ1 513 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 FUKQ8N0W3 1084 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 CDYL2Q8N8U2 506 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 TGFBRAP1Q8WUH2 860 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 AHCYL2Q96HN2 611 aaKnown RBP7.49□□□□□ -1.21
RTF1-204ENST00000558117 SLC6A15Q9H2J7 730 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 SLC12A5Q9H2X9 1139 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 PRSS50Q9UI38 385 aa7.49□□□□□ -1.21
RTF1-204ENST00000558117 POLR2AP24928 1970 aaKnown RBP7.49□□□□□ -1.21
RTF1-204ENST00000558117 EPG5Q9HCE0 2579 aa7.48□□□□□ -1.21
RTF1-204ENST00000558117 FSBPO95073 299 aa7.48□□□□□ -1.21
RTF1-204ENST00000558117 HSP90AB1P08238 724 aaKnown RBP7.48□□□□□ -1.21
RTF1-204ENST00000558117 ZNF20P17024 532 aa7.48□□□□□ -1.21
RTF1-204ENST00000558117 XPAP23025 273 aaPredicted RBP7.48□□□□□ -1.21
RTF1-204ENST00000558117 BPIFB4P59827 614 aa7.48□□□□□ -1.21
RTF1-204ENST00000558117 ERVK-21P61565 698 aa7.48□□□□□ -1.21
RTF1-204ENST00000558117 TCIRG1Q13488 830 aa7.48□□□□□ -1.21
RTF1-204ENST00000558117 TNIP1Q15025 636 aa7.48□□□□□ -1.21
RTF1-204ENST00000558117 UGT8Q16880 541 aa7.48□□□□□ -1.21
RTF1-204ENST00000558117 GAREM2Q75VX8 874 aa7.48□□□□□ -1.21
RTF1-204ENST00000558117 POLNQ7Z5Q5 900 aa7.48□□□□□ -1.21
RTF1-204ENST00000558117 GAB3Q8WWW8 586 aa7.48□□□□□ -1.21
RTF1-204ENST00000558117 DPF2Q92785 391 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms