RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 SEC24AO95486 1093 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 CLTAP09496 248 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 CXCL8P10145 99 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 MCM2P49736 904 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 NCKAP1LP55160 1127 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 PRKCQQ04759 706 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 SPAG1Q07617 926 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 DHX8Q14562 1220 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 KYAT1Q16773 422 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 ARSHQ5FYA8 562 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 LARP1BQ659C4 914 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 HAUS6Q7Z4H7 955 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 C1orf210Q8IVY1 113 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 ADSSL1Q8N142 457 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 ELMOD1Q8N336 334 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 KCNG4Q8TDN1 519 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 CORO1BQ9BR76 489 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 REEP2Q9BRK0 252 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 SEMA4AQ9H3S1 761 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 ODF2LQ9ULJ1 636 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 PCDHB8Q9UN66 801 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 INSL5Q9Y5Q6 135 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 CACNA1IQ9P0X4 2223 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 SPTBN4Q9H254 2564 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 TTC26A0AVF1 554 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 ZNF197O14709 1029 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 HNRNPDLO14979 420 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 LRRN2O75325 713 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 FAM13AO94988 1023 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 CPB1P15086 417 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 GLULP15104 373 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 CEBPBP17676 345 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 SCP2P22307 547 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 LRPAP1P30533 357 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 LIG4P49917 911 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 PPP2R3AQ06190 1150 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 ADCY1Q08828 1119 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 UBXN2BQ14CS0 331 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 CYP4A22Q5TCH4 519 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 IQCEQ6IPM2 695 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 ZC3H14Q6PJT7 736 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 PDZD4Q76G19 769 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 GPBP1Q86WP2 473 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 MYCT1Q8N699 235 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 RASSF8Q8NHQ8 419 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 ELSPBP1Q96BH3 223 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 KIF12Q96FN5 646 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 ZNF512Q96ME7 567 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 DDX23Q9BUQ8 820 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 BCO2Q9BYV7 579 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 PLA2G2FQ9BZM2 168 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 HAPLN2Q9GZV7 340 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 AFF4Q9UHB7 1163 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 MAFFQ9ULX9 164 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 UBQLN1Q9UMX0 589 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 R4GN57 208 aa12.06□□□□□ -0.48
CCDC88C-213ENST00000557455 TCHHQ07283 1943 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 WDR87Q6ZQQ6 2873 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 FAM170BA6NMN3 283 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 K7ENM7 598 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 M0QZQ0 153 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 XPOTO43592 962 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 MICAL2O94851 1124 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 BMP15O95972 392 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 LMNAP02545 664 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 KRT18P05783 430 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 SP9P0CG40 484 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 CYP3A5P20815 502 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 CD72P21854 359 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 TNFSF9P41273 254 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 YWHAHQ04917 246 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 TWF1Q12792 350 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 PRSS36Q5K4E3 855 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 TANGO2Q6ICL3 276 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 POTEHQ6S545 545 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 DSTYKQ6XUX3 929 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 RNF19BQ6ZMZ0 732 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 USP37Q86T82 979 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 KCNN1Q92952 543 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 TCEAL4Q96EI5 215 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 OXCT2Q9BYC2 517 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 OSBPL6Q9BZF3 934 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 ZHX3Q9H4I2 956 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 RPF1Q9H9Y2 349 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 PARVGQ9HBI0 331 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 ZFP14Q9HCL3 533 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 TBX20Q9UMR3 447 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 TIMM13Q9Y5L4 95 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 TICRRQ7Z2Z1 1910 aa12.05□□□□□ -0.48
CCDC88C-213ENST00000557455 LACTBL1A8MY62 500 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 OGTO15294 1046 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 TRAK2O60296 914 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 OAZ2O95190 189 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 PIGRP01833 764 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 LONP1P36776 959 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 CCR2P41597 374 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 ZNF131P52739 623 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 MCM6Q14566 821 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms