RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 ITIH3Q06033 890 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 SNW1Q13573 536 aaKnown RBP13.53□□□□□ -0.24
SLIRP-209ENST00000557342 SMAD2Q15796 467 aaKnown RBP13.53□□□□□ -0.24
SLIRP-209ENST00000557342 CES5AQ6NT32 575 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 PRSS55Q6UWB4 352 aaPredicted RBP13.53□□□□□ -0.24
SLIRP-209ENST00000557342 C12orf56Q8IXR9 622 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 KIAA0895Q8NCT3 520 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 APPL2Q8NEU8 664 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 LNX1Q8TBB1 728 aaPredicted RBP13.53□□□□□ -0.24
SLIRP-209ENST00000557342 HDAC7Q8WUI4 952 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 SUSD3Q96L08 255 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 FBXL18Q96ME1 805 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 UHRF1Q96T88 793 aaPredicted RBP13.53□□□□□ -0.24
SLIRP-209ENST00000557342 COL25A1Q9BXS0 654 aaPredicted RBP13.53□□□□□ -0.24
SLIRP-209ENST00000557342 RMND1Q9NWS8 449 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 ARHGEF37A1IGU5 675 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 H7C4K7 107 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 I3L4J1 428 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 TULP1O00294 542 aaPredicted RBP13.52□□□□□ -0.25
SLIRP-209ENST00000557342 CLIC2O15247 247 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 SMC2O95347 1197 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 IGFBP6P24592 240 aaPredicted RBP13.52□□□□□ -0.25
SLIRP-209ENST00000557342 TKTP29401 623 aaKnown RBP13.52□□□□□ -0.25
SLIRP-209ENST00000557342 SYCE2Q6PIF2 218 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 ELOA2Q8IYF1 753 aaPredicted RBP13.52□□□□□ -0.25
SLIRP-209ENST00000557342 XXYLT1Q8NBI6 393 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 ZSWIM2Q8NEG5 633 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 S1PR5Q9H228 398 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 PLEKHA4Q9H4M7 779 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 SFXN1Q9H9B4 322 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 DPP3Q9NY33 737 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 MTRRQ9UBK8 725 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 PRKAG3Q9UGI9 489 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 PCDHB8Q9UN66 801 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 BACE2Q9Y5Z0 518 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 C2orf16Q68DN1 1984 aa13.52□□□□□ -0.25
SLIRP-209ENST00000557342 ANO9A1A5B4 782 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 DLL1O00548 723 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 PIRO00625 290 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 PDXKO00764 312 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 KINO60870 393 aaKnown RBP13.51□□□□□ -0.25
SLIRP-209ENST00000557342 AARSP49588 968 aaKnown RBP eCLIP13.51□□□□□ -0.25
SLIRP-209ENST00000557342 CYP2J2P51589 502 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 GUCY2FP51841 1108 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 PNOCQ13519 176 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 SNRNP35Q16560 246 aaKnown RBP13.51□□□□□ -0.25
SLIRP-209ENST00000557342 VARS2Q5ST30 1063 aaKnown RBP13.51□□□□□ -0.25
SLIRP-209ENST00000557342 C9orf57Q5W0N0 161 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 DSTYKQ6XUX3 929 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 PALB2Q86YC2 1186 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 EFCAB13Q8IY85 973 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 TMEM174Q8WUU8 243 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 RIPOR3Q96MK2 946 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 ZNF560Q96MR9 790 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 GSDMAQ96QA5 445 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 CLSTN3Q9BQT9 956 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 GTPBP4Q9BZE4 634 aaKnown RBP13.51□□□□□ -0.25
SLIRP-209ENST00000557342 ADAM7Q9H2U9 754 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 MAN1C1Q9NR34 630 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 USP15Q9Y4E8 981 aaPredicted RBP13.51□□□□□ -0.25
SLIRP-209ENST00000557342 UNC80Q8N2C7 3258 aa13.51□□□□□ -0.25
SLIRP-209ENST00000557342 TSC2P49815 1807 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 M0QZQ0 153 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 TGM5O43548 720 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 CALUO43852 315 aaPredicted RBP13.5□□□□□ -0.25
SLIRP-209ENST00000557342 EXOC3O60645 756 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 PRPF40AO75400 957 aaKnown RBP13.5□□□□□ -0.25
SLIRP-209ENST00000557342 TMEM191BP0C7N4 346 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 RPL17P18621 184 aaKnown RBP13.5□□□□□ -0.25
SLIRP-209ENST00000557342 PNPLA4P41247 253 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 MTHFRP42898 656 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 TAF6P49848 677 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 LILRA4P59901 499 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 UBE2HP62256 183 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 TFAMQ00059 246 aaKnown RBP13.5□□□□□ -0.25
SLIRP-209ENST00000557342 RAB33AQ14088 237 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 MYBPC2Q14324 1141 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 RARS2Q5T160 578 aaKnown RBP13.5□□□□□ -0.25
SLIRP-209ENST00000557342 CYP26C1Q6V0L0 522 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 CBWD2Q8IUF1 395 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 SLC9A9Q8IVB4 645 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 GLYCTKQ8IVS8 523 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 GUF1Q8N442 669 aaKnown RBP13.5□□□□□ -0.25
SLIRP-209ENST00000557342 CMASQ8NFW8 434 aaPredicted RBP13.5□□□□□ -0.25
SLIRP-209ENST00000557342 SUSD6Q92537 303 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 SMARCE1Q969G3 411 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 ANKRD36BP1Q96IX9 119 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 NECTIN4Q96NY8 510 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 IPO9Q96P70 1041 aaKnown RBP13.5□□□□□ -0.25
SLIRP-209ENST00000557342 POP1Q99575 1024 aaKnown RBP13.5□□□□□ -0.25
SLIRP-209ENST00000557342 OXCT2Q9BYC2 517 aaPredicted RBP13.5□□□□□ -0.25
SLIRP-209ENST00000557342 KCTD10Q9H3F6 313 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 PDE11AQ9HCR9 933 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 ITGA11Q9UKX5 1188 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 R3HCC1Q9Y3T6 440 aaKnown RBP13.5□□□□□ -0.25
SLIRP-209ENST00000557342 DENND4AQ7Z401 1863 aa13.5□□□□□ -0.25
SLIRP-209ENST00000557342 GADD45BO75293 160 aaPredicted RBP13.49□□□□□ -0.25
SLIRP-209ENST00000557342 TNNC2P02585 160 aa13.49□□□□□ -0.25
SLIRP-209ENST00000557342 ODC1P11926 461 aa13.49□□□□□ -0.25
SLIRP-209ENST00000557342 TYMPP19971 482 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms