RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, human

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLIRP-208	ENST00000556956	DLX3	O60479	287 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	FSBP	O95073	299 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	BMP15	O95972	392 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	CAPNS1	P04632	268 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	C8B	P07358	591 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	IFIT1	P09914	478 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	EPB41	P11171	864 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	PABPC1	P11940	636 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	NF2	P35240	595 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	THBS2	P35442	1172 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	CYLC1	P35663	651 aa	Predicted RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	PBX1	P40424	430 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	IL15	P40933	162 aa	Predicted RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	IARS	P41252	1262 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	RFX5	P48382	616 aa	Predicted RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	TDO2	P48775	406 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	METAP2	P50579	478 aa	Known RBP eCLIP	3.18	□□□□□ -1.9	7e-8	■□□□□ 9.9
SLIRP-208	ENST00000556956	GNGT1	P63211	74 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	SATB1	Q01826	763 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	CYP4F3	Q08477	520 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	IFFO1	Q0D2I5	559 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	DRP2	Q13474	957 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	SMAD4	Q13485	552 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	GCKR	Q14397	625 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	NEDD9	Q14511	834 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	PLCB4	Q15147	1175 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	RABL6	Q3YEC7	729 aa	Predicted RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	NAALADL2	Q58DX5	795 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	PRAMEF18	Q5VWM3	479 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	PAPD7	Q5XG87	772 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	KRT40	Q6A162	431 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	ZNF530	Q6P9A1	599 aa	Predicted RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	DDX46	Q7L014	1031 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	TRAPPC11	Q7Z392	1133 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	UBE3B	Q7Z3V4	1068 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	PLEKHH3	Q7Z736	793 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	YTHDF3	Q7Z739	585 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	TAX1BP1	Q86VP1	789 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	ANKRD18A	Q8IVF6	992 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	FMNL3	Q8IVF7	1028 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	FOXP4	Q8IVH2	680 aa	Predicted RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	MMGT1	Q8N4V1	131 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	CELF2-AS1	Q8N7Q2	184 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	PRPF38A	Q8NAV1	312 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	CAGE1	Q8TC20	777 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	MAGEC3	Q8TD91	643 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	BCAS4	Q8TDM0	211 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	IP6K1	Q92551	441 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	ARMC5	Q96C12	935 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	EDC3	Q96F86	508 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	LTV1	Q96GA3	475 aa	Predicted RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	KAZALD1	Q96I82	304 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	NEUROD6	Q96NK8	337 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	NOX5	Q96PH1	765 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	NUP88	Q99567	741 aa	Predicted RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	CDC6	Q99741	560 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	MYD88	Q99836	296 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	PAGR1	Q9BTK6	254 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	PHF20	Q9BVI0	1012 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	NUP58	Q9BVL2	599 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	TSGA10	Q9BZW7	698 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	TANGO6	Q9C0B7	1094 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	CCDC113	Q9H0I3	377 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	KAT14	Q9H8E8	782 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	ACTR5	Q9H9F9	607 aa	Predicted RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	GNL3L	Q9NVN8	582 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	SPATA6	Q9NWH7	488 aa	Predicted RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	ZNHIT6	Q9NWK9	470 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	DTL	Q9NZJ0	730 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	SIRPG	Q9P1W8	387 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	MYOT	Q9UBF9	498 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	ADD3	Q9UEY8	706 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	LIMA1	Q9UHB6	759 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	DBNL	Q9UJU6	430 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	FAM184B	Q9ULE4	1060 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	SRPRB	Q9Y5M8	271 aa	Known RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	SAR1B	Q9Y6B6	198 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	EPN1	Q9Y6I3	576 aa	Predicted RBP	3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	CAPN7	Q9Y6W3	813 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	ZNF609	O15014	1411 aa		3.18	□□□□□ -1.9
SLIRP-208	ENST00000556956	AKAP12	Q02952	1782 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	TOPAZ1	Q8N9V7	1692 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	MON2	Q7Z3U7	1717 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	TCRBV5S2	A0A599	114 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	ANO9	A1A5B4	782 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956		H7C1D1	291 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	ARNTL	O00327	626 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	DDX3X	O00571	662 aa	Known RBP eCLIP	3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	AQP7	O14520	342 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	NDUFAB1	O14561	156 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	POLR2D	O15514	142 aa	Known RBP	3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	PDPK1	O15530	556 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	TEX33	O43247	280 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	ZBTB43	O43298	467 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	KRT86	O43790	486 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	ZEB2	O60315	1214 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	USO1	O60763	962 aa	Known RBP	3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	TACC1	O75410	805 aa		3.17	□□□□□ -1.9
SLIRP-208	ENST00000556956	IPO7	O95373	1038 aa	Known RBP	3.17	□□□□□ -1.9

Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms