RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 MTMR12Q9C0I1 747 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 PRDM6Q9NQX0 595 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 INTS13Q9NVM9 706 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 DMAC2Q9NW81 257 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 AGAP1Q9UPQ3 857 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 CTNND2Q9UQB3 1225 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 ATG2AQ2TAZ0 1938 aa12.38□□□□□ -0.43
CCDC88C-212ENST00000556767 PIRO00625 290 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 LINC01565O15544 149 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 NCK2O43639 380 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 CLASP2O75122 1294 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 PHACTR2O75167 634 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 EFEMP2O95967 443 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 CNPP09543 421 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 KRT13P13646 458 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 BMP6P22004 513 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 CCNE1P24864 410 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 TKTP29401 623 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 PSMC2P35998 433 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 NDUFV1P49821 464 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 TAF6P49848 677 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 STX17P56962 302 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 RBP5P82980 135 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 PSMD5Q16401 504 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 DUSP6Q16828 381 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 EDRF1Q3B7T1 1238 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 ZCWPW2Q504Y3 356 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 KIAA0319Q5VV43 1072 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 ANKRD40Q6AI12 368 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 CENPPQ6IPU0 288 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 FAM186BQ8IYM0 893 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 CSGALNACT2Q8N6G5 542 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 OR5B17Q8NGF7 314 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 NELFBQ8WX92 580 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 HLA-CQ95604 372 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 ZNF560Q96MR9 790 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 KLHL5Q96PQ7 755 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 CDCA3Q99618 268 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 CGRRF1Q99675 332 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 CHST7Q9NS84 486 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 IRAK3Q9Y616 596 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 PTPRJQ12913 1337 aa12.37□□□□□ -0.43
CCDC88C-212ENST00000556767 BICDL2A1A5D9 508 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 SPDYE4A6NLX3 237 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 PPP1R3GB7ZBB8 358 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 AKAP3O75969 853 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 SLC34A2O95436 690 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 ADH1AP07327 375 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 SRGAP2BP0DMP2 458 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 EPB41P11171 864 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 RPL17P18621 184 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 KCNA5P22460 613 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 FGFR3P22607 806 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 PMS1P54277 932 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 LILRA4P59901 499 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 RBM10P98175 930 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 FKBP3Q00688 224 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 CREMQ03060 361 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 LRRC63Q05C16 580 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 BFSP1Q12934 665 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 PAK1Q13153 545 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 BIRC3Q13489 604 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 NFIL3Q16649 462 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 PDXDC1Q6P996 788 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 USP37Q86T82 979 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 EFHBQ8N7U6 833 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 C1orf127Q8N9H9 656 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 APPL2Q8NEU8 664 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 PABPC5Q96DU9 382 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 SUSD3Q96L08 255 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 UBE2ZQ9H832 354 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 THEGQ9P2T0 379 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 ITGA11Q9UKX5 1188 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 PCDHB8Q9UN66 801 aa12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 TIMM13Q9Y5L4 95 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-212ENST00000556767 ANO9A1A5B4 782 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 FSD2A1L4K1 749 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 LRRIQ3A6PVS8 624 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 H3BQ06 376 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 SYN3O14994 580 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 TEX28O15482 410 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 LILRB3O75022 631 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 PNPLA4P41247 253 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 VAMP7P51809 220 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 ARPP19P56211 112 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 DLG4P78352 724 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 ADAM15Q13444 863 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 TRPC3Q13507 836 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 SV2CQ496J9 727 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 VARS2Q5ST30 1063 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 ANKS3Q6ZW76 656 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 INTS8Q75QN2 995 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 TRAPPC11Q7Z392 1133 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 PPFIBP1Q86W92 1011 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 PALB2Q86YC2 1186 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 LNX1Q8TBB1 728 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 PLEKHO2Q8TD55 490 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 PARD3BQ8TEW8 1205 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 TMEM174Q8WUU8 243 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms