RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 DDX23Q9BUQ8 820 aaKnown RBP14.35□□□□□ -0.11
SHMT2-222ENST00000555774 CHUKO15111 745 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 RGS20O76081 388 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 ACSL3O95573 720 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 DSG3P32926 999 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 ADCY8P40145 1251 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 NAMPTP43490 491 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 LONRF1Q17RB8 773 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 DCAF15Q66K64 600 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 SCYL3Q8IZE3 742 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 ATG4AQ8WYN0 398 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 SGSM3Q96HU1 749 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 CGRRF1Q99675 332 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 TRIM7Q9C029 511 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 CCDC113Q9H0I3 377 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 ADAM22Q9P0K1 906 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 ACTL7BQ9Y614 415 aa14.35□□□□□ -0.11
SHMT2-222ENST00000555774 PARP14Q460N5 1801 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 THAP12O43422 761 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 VNN1O95497 513 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 VIMP08670 466 aaKnown RBP14.34□□□□□ -0.11
SHMT2-222ENST00000555774 ABHD2P08910 425 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 CLTAP09496 248 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 RALAP11233 206 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 GNA15P30679 374 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 POLGP54098 1239 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-222ENST00000555774 NLRP11P59045 1033 aaKnown RBP14.34□□□□□ -0.11
SHMT2-222ENST00000555774 MAMLD1Q13495 774 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 SPRED3Q2MJR0 410 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 ZNF365Q70YC5 407 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 FUKQ8N0W3 1084 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 RIBC1Q8N443 379 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-222ENST00000555774 MAGEC3Q8TD91 643 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 CCDC77Q9BR77 488 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 HERPUD2Q9BSE4 406 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 OSBPL8Q9BZF1 889 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 NINJ2Q9NZG7 142 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 SLC12A4Q9UP95 1085 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 PCDHB4Q9Y5E5 795 aa14.34□□□□□ -0.11
SHMT2-222ENST00000555774 NDC80O14777 642 aa14.33□□□□□ -0.11
SHMT2-222ENST00000555774 OAS1P00973 400 aaKnown RBP14.33□□□□□ -0.11
SHMT2-222ENST00000555774 AP3M2P53677 418 aa14.33□□□□□ -0.11
SHMT2-222ENST00000555774 MKRN3Q13064 507 aaKnown RBP14.33□□□□□ -0.11
SHMT2-222ENST00000555774 STAT4Q14765 748 aa14.33□□□□□ -0.11
SHMT2-222ENST00000555774 CYB5D1Q6P9G0 228 aa14.33□□□□□ -0.11
SHMT2-222ENST00000555774 DYDC1Q8WWB3 177 aa14.33□□□□□ -0.11
SHMT2-222ENST00000555774 PLCD4Q9BRC7 762 aa14.33□□□□□ -0.11
SHMT2-222ENST00000555774 C11orf70Q9BRQ4 267 aa14.33□□□□□ -0.11
SHMT2-222ENST00000555774 PORCNQ9H237 461 aa14.33□□□□□ -0.11
SHMT2-222ENST00000555774 ACAD9Q9H845 621 aa14.33□□□□□ -0.11
SHMT2-222ENST00000555774 PARVAQ9NVD7 372 aa14.33□□□□□ -0.11
SHMT2-222ENST00000555774 RBAKQ9NYW8 714 aaPredicted RBP14.33□□□□□ -0.11
SHMT2-222ENST00000555774 IP6K2Q9UHH9 426 aa14.33□□□□□ -0.11
SHMT2-222ENST00000555774 ZNF214Q9UL59 606 aaPredicted RBP14.33□□□□□ -0.11
SHMT2-222ENST00000555774 DOCK1Q14185 1865 aa14.33□□□□□ -0.11
SHMT2-222ENST00000555774 TMEM120BA0PK00 339 aa14.33□□□□□ -0.12
SHMT2-222ENST00000555774 MTERF2Q49AM1 385 aa14.33□□□□□ -0.12
SHMT2-222ENST00000555774 DRICH1Q6PGQ1 229 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-222ENST00000555774 VSTM1Q6UX27 236 aa14.33□□□□□ -0.12
SHMT2-222ENST00000555774 CRELD2Q6UXH1 353 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-222ENST00000555774 RBBP8NLQ8NC74 664 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-222ENST00000555774 ZNF280CQ8ND82 737 aa14.33□□□□□ -0.12
SHMT2-222ENST00000555774 DEPTORQ8TB45 409 aa14.33□□□□□ -0.12
SHMT2-222ENST00000555774 RBM41Q96IZ5 413 aaKnown RBP14.33□□□□□ -0.12
SHMT2-222ENST00000555774 WNK4Q96J92 1243 aa14.33□□□□□ -0.12
SHMT2-222ENST00000555774 DHX33Q9H6R0 707 aaKnown RBP14.33□□□□□ -0.12
SHMT2-222ENST00000555774 TMEM134Q9H6X4 195 aa14.33□□□□□ -0.12
SHMT2-222ENST00000555774 CYP39A1Q9NYL5 469 aa14.33□□□□□ -0.12
SHMT2-222ENST00000555774 ZNF112Q9UJU3 913 aa14.33□□□□□ -0.12
SHMT2-222ENST00000555774 R3HDM2Q9Y2K5 976 aaKnown RBP14.33□□□□□ -0.12
SHMT2-222ENST00000555774 MAFBQ9Y5Q3 323 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-222ENST00000555774 SIP14410 1827 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 SNX3O60493 162 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 CDH16O75309 829 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 ATG7O95352 703 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 CALCAP01258 141 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 OATP04181 439 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 ICAM3P32942 547 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 ARL2P36404 184 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 MCL1Q07820 350 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 SNCBQ16143 134 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 LRRC38Q5VT99 294 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 TRPM8Q7Z2W7 1104 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 PARP9Q8IXQ6 854 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 RCOR2Q8IZ40 523 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 FEZF2Q8TBJ5 459 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 JDP2Q8WYK2 163 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 ELMO3Q96BJ8 720 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 ELAC2Q9BQ52 826 aaKnown RBP14.32□□□□□ -0.12
SHMT2-222ENST00000555774 TEX13BQ9BXU2 312 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 APOBEC3GQ9HC16 384 aaKnown RBP14.32□□□□□ -0.12
SHMT2-222ENST00000555774 HAUS2Q9NVX0 235 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 CFAP73A6NFT4 308 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 C19orf81C9J6K1 198 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 TLR3O15455 904 aaKnown RBP14.32□□□□□ -0.12
SHMT2-222ENST00000555774 KLRC2P26717 231 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 RFC5P40937 340 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 TAS2R40P59535 323 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 GRM1Q13255 1194 aa14.32□□□□□ -0.12
SHMT2-222ENST00000555774 KYNUQ16719 465 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms