RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 COQ4Q9Y3A0 265 aa12.04□□□□□ -0.48
SHMT2-220ENST00000555634 SCN1AP35498 2009 aa12.04□□□□□ -0.48
SHMT2-220ENST00000555634 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-220ENST00000555634 A0A1W2PQJ5 194 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 PTGESO14684 152 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 TEX33O43247 280 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 TRAPPC3O43617 180 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 OFD1O75665 1012 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 STAU1O95793 577 aaKnown RBP12.03□□□□□ -0.48
SHMT2-220ENST00000555634 ASS1P00966 412 aaKnown RBP12.03□□□□□ -0.48
SHMT2-220ENST00000555634 C4BPAP04003 597 aaKnown RBP12.03□□□□□ -0.48
SHMT2-220ENST00000555634 ITGB8P26012 769 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 LRPAP1P30533 357 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 POLR2FP61218 127 aaKnown RBP12.03□□□□□ -0.48
SHMT2-220ENST00000555634 GCNT1Q02742 428 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 GPNMBQ14956 572 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 C1orf220Q5T0J3 134 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 SMYD5Q6GMV2 418 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 C15orf39Q6ZRI6 1047 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 ZNF365Q70YC5 407 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 CMTR2Q8IYT2 770 aaKnown RBP12.03□□□□□ -0.48
SHMT2-220ENST00000555634 JAKMIP2Q96AA8 810 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 C18orf25Q96B23 403 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-220ENST00000555634 TRIM44Q96DX7 344 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-220ENST00000555634 MYO6Q9UM54 1294 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 SIK3Q9Y2K2 1263 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 MYH10P35580 1976 aa12.03□□□□□ -0.48
SHMT2-220ENST00000555634 CASTOR2A6NHX0 329 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 AKR1B15C9JRZ8 316 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-220ENST00000555634 PODXLO00592 558 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 ODC1P11926 461 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 UCHL3P15374 230 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 LAG3P18627 525 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 PBX1P40424 430 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 ALDH7A1P49419 539 aaKnown RBP12.02□□□□□ -0.49
SHMT2-220ENST00000555634 WNT7BP56706 349 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 ZBED6P86452 979 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 LRMPQ12912 555 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 BTG3Q14201 252 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-220ENST00000555634 PAN2Q504Q3 1202 aaKnown RBP12.02□□□□□ -0.49
SHMT2-220ENST00000555634 CLLU1OSQ5K130 101 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 C9orf57Q5W0N0 161 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 RTN4RL1Q86UN2 441 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-220ENST00000555634 VPS36Q86VN1 386 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 CCDC112Q8NEF3 446 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 PHOSPHO2Q8TCD6 241 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 HERVK_113Q902F9 699 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 TOP1MTQ969P6 601 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 RNPC3Q96LT9 517 aaKnown RBP12.02□□□□□ -0.49
SHMT2-220ENST00000555634 ZMAT2Q96NC0 199 aaKnown RBP12.02□□□□□ -0.49
SHMT2-220ENST00000555634 MMS19Q96T76 1030 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 TMEM175Q9BSA9 504 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 COLEC11Q9BWP8 271 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 TBC1D13Q9NVG8 400 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 NXF1Q9UBU9 619 aaKnown RBP12.02□□□□□ -0.49
SHMT2-220ENST00000555634 STK39Q9UEW8 545 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 DSEQ9UL01 958 aa12.02□□□□□ -0.49
SHMT2-220ENST00000555634 MEIS3P2A8K0S8 358 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 HUS1O60921 280 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 MFAP3LO75121 409 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 B3GAT3O94766 335 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 KIF4AO95239 1232 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 IPO7O95373 1038 aaKnown RBP12.01□□□□□ -0.49
SHMT2-220ENST00000555634 KRT5P13647 590 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 ATP2A2P16615 1042 aaKnown RBP12.01□□□□□ -0.49
SHMT2-220ENST00000555634 SLC9A1P19634 815 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 PPM1AP35813 382 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 USP8P40818 1118 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 STAT1P42224 750 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 OR1G1P47890 313 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 MYL6P60660 151 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 ELAVL2Q12926 359 aaKnown RBP12.01□□□□□ -0.49
SHMT2-220ENST00000555634 CUL2Q13617 745 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 ZBTB6Q15916 424 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 WDR72Q3MJ13 1102 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 KLHDC7AQ5VTJ3 777 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 SFMBT2Q5VUG0 894 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 FAM117BQ6P1L5 589 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 DSTYKQ6XUX3 929 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 SCARA5Q6ZMJ2 495 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.01□□□□□ -0.494e-7■□□□□ 9.3
SHMT2-220ENST00000555634 METTL23Q86XA0 190 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 APPL2Q8NEU8 664 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 CPLX3Q8WVH0 158 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 ZNF516Q92618 1163 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.01□□□□□ -0.497e-8■■□□□ 13.7
SHMT2-220ENST00000555634 UBE2OQ9C0C9 1292 aaKnown RBP12.01□□□□□ -0.49
SHMT2-220ENST00000555634 VRTNQ9H8Y1 702 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 CYP3A43Q9HB55 503 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 UBE2TQ9NPD8 197 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-220ENST00000555634 NLRC4Q9NPP4 1024 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 CAPN11Q9UMQ6 739 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 RWDD3Q9Y3V2 267 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 INSL6Q9Y581 213 aa12.01□□□□□ -0.49
SHMT2-220ENST00000555634 SF3B1O75533 1304 aaKnown RBP eCLIP12.01□□□□□ -0.495e-8■■■■■ 37.4
SHMT2-220ENST00000555634 KPNA7A9QM74 516 aa12□□□□□ -0.49
SHMT2-220ENST00000555634 AP5Z1O43299 807 aa12□□□□□ -0.49
SHMT2-220ENST00000555634 TLL1O43897 1013 aa12□□□□□ -0.49
SHMT2-220ENST00000555634 DGKIO75912 1065 aa12□□□□□ -0.49
SHMT2-220ENST00000555634 VNN1O95497 513 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms