RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 NXF1Q9UBU9 619 aaKnown RBP10.97□□□□□ -0.65
SRP54-208ENST00000555557 POLIQ9UNA4 740 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 INPP5FQ9Y2H2 1132 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 ZKSCAN5Q9Y2L8 839 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 GIT1Q9Y2X7 761 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 DERAQ9Y315 318 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 ZC3H11AO75152 810 aaKnown RBP eCLIP10.97□□□□□ -0.657e-8■□□□□ 9.3
SRP54-208ENST00000555557 POMCP01189 267 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 CXCL10P02778 98 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 FGFR1P11362 822 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 IGFBP6P24592 240 aaPredicted RBP10.97□□□□□ -0.65
SRP54-208ENST00000555557 STAT1P42224 750 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 MFAP3P55082 362 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 RBP5P82980 135 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 MEA1Q16626 185 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 WDR72Q3MJ13 1102 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 RAD9BQ6WBX8 426 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 SCARA5Q6ZMJ2 495 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 IRF2BP2Q7Z5L9 587 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 CCDC112Q8NEF3 446 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 RABGGTAQ92696 567 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 PGBD4Q96DM1 585 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 PPP1R10Q96QC0 940 aaKnown RBP10.97□□□□□ -0.65
SRP54-208ENST00000555557 RPS6KC1Q96S38 1066 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 IMPG2Q9BZV3 1241 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 ACP6Q9NPH0 428 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 ZNHIT6Q9NWK9 470 aaKnown RBP10.97□□□□□ -0.65
SRP54-208ENST00000555557 AIPL1Q9NZN9 384 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 ARHGAP20Q9P2F6 1191 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 ITGA11Q9UKX5 1188 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 UBQLN1Q9UMX0 589 aaKnown RBP10.97□□□□□ -0.65
SRP54-208ENST00000555557 CITO14578 2027 aa10.97□□□□□ -0.65
SRP54-208ENST00000555557 SCN5AQ14524 2016 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 TRIP11Q15643 1979 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.96□□□□□ -0.65
SRP54-208ENST00000555557 OFD1O75665 1012 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 TIMP1P01033 207 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 CALCAP01258 141 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 WEE2P0C1S8 567 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 SKIP12755 728 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 CSF2RAP15509 400 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 RAG1P15918 1043 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 FECHP22830 423 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 HNRNPH3P31942 346 aaKnown RBP10.96□□□□□ -0.65
SRP54-208ENST00000555557 SOX5P35711 763 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 FAM189BP81408 668 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 GCNT1Q02742 428 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 MLLT1Q03111 559 aaPredicted RBP10.96□□□□□ -0.65
SRP54-208ENST00000555557 CUL2Q13617 745 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 ASIC2Q16515 512 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 C9orf57Q5W0N0 161 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 HGSNATQ68CP4 663 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 CYP26C1Q6V0L0 522 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 HPDLQ96IR7 371 aa10.96□□□□□ -0.65
SRP54-208ENST00000555557 NHEJ1Q9H9Q4 299 aaPredicted RBP10.96□□□□□ -0.65
SRP54-208ENST00000555557 R3HCC1Q9Y3T6 440 aaKnown RBP10.96□□□□□ -0.65
SRP54-208ENST00000555557 KIAA0355O15063 1070 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 EVI5O60447 810 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 EOMESO95936 686 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 THP07101 528 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 CAPN2P17655 700 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 CD58P19256 250 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 RFX1P22670 979 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 RGS19P49795 217 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 CDH8P55286 799 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 NAB2Q15742 525 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 TDRD12Q587J7 1177 aaKnown RBP10.96□□□□□ -0.66
SRP54-208ENST00000555557 CLLU1OSQ5K130 101 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 TOGARAM2Q6ZUX3 1019 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 TMTC1Q8IUR5 882 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 SYN2Q92777 582 aaPredicted RBP10.96□□□□□ -0.66
SRP54-208ENST00000555557 APBB2Q92870 758 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 DESI2Q9BSY9 194 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 NUCKS1Q9H1E3 243 aaKnown RBP10.96□□□□□ -0.66
SRP54-208ENST00000555557 HAUS4Q9H6D7 363 aa10.96□□□□□ -0.66
SRP54-208ENST00000555557 PDE4DIPQ5VU43 2346 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 CASTOR2A6NHX0 329 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 PIRO00625 290 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 CYP26A1O43174 497 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 ARHGAP6O43182 974 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 NRDCO43847 1150 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 PARNO95453 639 aaKnown RBP10.95□□□□□ -0.66
SRP54-208ENST00000555557 ACRP10323 421 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 KRT5P13647 590 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 CLCN1P35523 988 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 EIF4A3P38919 411 aaKnown RBP10.95□□□□□ -0.66
SRP54-208ENST00000555557 ASPAP45381 313 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 RAP1GAPP47736 663 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 GATMP50440 423 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 KLHL30Q0D2K2 578 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 ZNF667Q5HYK9 610 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.95□□□□□ -0.666e-6■■■□□ 19.1
SRP54-208ENST00000555557 SHC3Q92529 594 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 PAAF1Q9BRP4 392 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 NIF3L1Q9GZT8 377 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 MYO6Q9UM54 1294 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 PCDHB7Q9Y5E2 793 aa10.95□□□□□ -0.66
SRP54-208ENST00000555557 FAM170AA1A519 330 aa10.94□□□□□ -0.66
SRP54-208ENST00000555557 ANO9A1A5B4 782 aa10.94□□□□□ -0.66
SRP54-208ENST00000555557 SPTLC1O15269 473 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms