RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 CYP3A4P08684 503 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 CCNB1P14635 433 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ARSEP51690 589 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 HIRAP54198 1017 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 TMED1Q13445 227 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 TFDP1Q14186 410 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ACAP1Q15027 740 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ZNF394Q53GI3 561 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 COBLL1Q53SF7 1204 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 SPOPLQ6IQ16 392 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 RGS9BPQ6ZS82 235 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ZCCHC23Q6ZST2 131 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 TRMT10CQ7L0Y3 403 aaKnown RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 CLNKQ7Z7G1 428 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 CBWD2Q8IUF1 395 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 CTAGE3PQ8IX95 158 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 GALNT15Q8N3T1 639 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 EIF1ADQ8N9N8 165 aaKnown RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 SH3TC2Q8TF17 1288 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ZNF75CPQ92670 426 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 FAM111AQ96PZ2 611 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 RTFDC1Q9BY42 306 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 RIOX1Q9H6W3 641 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 PCYOX1Q9UHG3 505 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ZNF652Q9Y2D9 606 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 TNS2Q63HR2 1409 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 A0A0A6YYK5 440 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ZBTB5O15062 677 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 GNPATO15228 680 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 FAM155BO75949 473 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 TOP3BO95985 862 aaKnown RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 BCRP11274 1271 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 NELFEP18615 380 aaKnown RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 MSX2P35548 267 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 TAS2R40P59535 323 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 NFIAQ12857 509 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 SMTNL2Q2TAL5 461 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 OR52E8Q6IFG1 317 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 PAOXQ6QHF9 649 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 PPP1R21Q6ZMI0 780 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 MFN1Q8IWA4 741 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 RHOT2Q8IXI1 618 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 SYT2Q8N9I0 419 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-217ENST00000555022 SEMA4DQ92854 862 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 PPP1R36Q96LQ0 422 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 RILPQ96NA2 401 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ACAP3Q96P50 834 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 NDNQ99608 321 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 TMEM121Q9BTD3 319 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 TMEM120AQ9BXJ8 343 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 SLC13A1Q9BZW2 595 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 PARVGQ9HBI0 331 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 TRAF3IP3Q9Y228 551 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 SH3BP1Q9Y3L3 701 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 ZMYM2Q9UBW7 1377 aa9.41□□□□□ -0.9
SYNE2-217ENST00000555022 SNED1Q8TER0 1413 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 SGK1O00141 431 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 SLC16A4O15374 487 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 PFDN1O60925 122 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 PSMG1O95456 288 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 F7P08709 466 aaPredicted RBP9.4□□□□□ -0.9
SYNE2-217ENST00000555022 MXI1P50539 228 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 TMEM62Q0P6H9 643 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 BFSP1Q12934 665 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 RNF43Q68DV7 783 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 BTNL9Q6UXG8 535 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 C16orf86Q6ZW13 317 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 TRIM74Q86UV6 250 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 TRIM73Q86UV7 250 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 AMIGO3Q86WK7 504 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 RIBC1Q8N443 379 aaPredicted RBP9.4□□□□□ -0.9
SYNE2-217ENST00000555022 AGR3Q8TD06 166 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 PLEKHO2Q8TD55 490 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 TCP10LQ8TDR4 215 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 C10orf82Q8WW14 230 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 KREMEN1Q96MU8 473 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 ZNF287Q9HBT7 754 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 NEU2Q9Y3R4 380 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 LRRC42Q9Y546 428 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 CACNA1SQ13698 1873 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 ZNF335Q9H4Z2 1342 aaPredicted RBP9.4□□□□□ -0.9
SYNE2-217ENST00000555022 TJP3O95049 919 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 MYL2P10916 166 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 ARFIP2P53365 341 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 USP46P62068 366 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 C1orf146Q5VVC0 180 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 CCDC62Q6P9F0 684 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 CADPS2Q86UW7 1296 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 CEP70Q8NHQ1 597 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 EPS8L1Q8TE68 723 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 TRIM56Q9BRZ2 755 aaKnown RBP9.4□□□□□ -0.9
SYNE2-217ENST00000555022 DNPEPQ9ULA0 475 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 PPM1HQ9ULR3 514 aa9.4□□□□□ -0.9
SYNE2-217ENST00000555022 PARP4Q9UKK3 1724 aaKnown RBP9.4□□□□□ -0.9
SYNE2-217ENST00000555022 ARHGEF35A5YM69 484 aa9.4□□□□□ -0.91
SYNE2-217ENST00000555022 MIF4GDA9UHW6 222 aaKnown RBP9.4□□□□□ -0.91
SYNE2-217ENST00000555022 E5RJQ4 531 aa9.4□□□□□ -0.91
SYNE2-217ENST00000555022 MAGEB3O15480 346 aa9.4□□□□□ -0.91
SYNE2-217ENST00000555022 EDF1O60869 148 aaKnown RBP9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms