RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 PCSK4Q6UW60 755 aa4.34□□□□□ -1.71
VRK1-202ENST00000553683 ZNF365Q70YC5 407 aa4.34□□□□□ -1.71
VRK1-202ENST00000553683 UBE3BQ7Z3V4 1068 aa4.34□□□□□ -1.71
VRK1-202ENST00000553683 COLGALT2Q8IYK4 626 aa4.34□□□□□ -1.71
VRK1-202ENST00000553683 DCBLD1Q8N8Z6 715 aa4.34□□□□□ -1.71
VRK1-202ENST00000553683 STAG1Q8WVM7 1258 aa4.34□□□□□ -1.71
VRK1-202ENST00000553683 LINC00476Q8WZB0 136 aa4.34□□□□□ -1.71
VRK1-202ENST00000553683 CHFRQ96EP1 664 aa4.34□□□□□ -1.71
VRK1-202ENST00000553683 SMAD5Q99717 465 aaKnown RBP4.34□□□□□ -1.71
VRK1-202ENST00000553683 ADAM2Q99965 735 aa4.34□□□□□ -1.71
VRK1-202ENST00000553683 PACSIN1Q9BY11 444 aa4.34□□□□□ -1.71
VRK1-202ENST00000553683 SLITRK6Q9H5Y7 841 aa4.34□□□□□ -1.71
VRK1-202ENST00000553683 WDCPQ9H6R7 721 aa4.34□□□□□ -1.71
VRK1-202ENST00000553683 CYP4F11Q9HBI6 524 aa4.34□□□□□ -1.71
VRK1-202ENST00000553683 SYBUQ9NX95 663 aa4.34□□□□□ -1.71
VRK1-202ENST00000553683 ING1Q9UK53 422 aaPredicted RBP4.34□□□□□ -1.71
VRK1-202ENST00000553683 RUVBL1Q9Y265 456 aaKnown RBP4.34□□□□□ -1.71
VRK1-202ENST00000553683 TCRBV7S2A1N4TA0A589 114 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 GRID2IPA4D2P6 1211 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 E7ENX8 843 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 KIAA0391O15091 583 aaKnown RBP4.33□□□□□ -1.72
VRK1-202ENST00000553683 GPANK1O95872 356 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 CHEK2O96017 543 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 U2AF1L5P0DN76 240 aaPredicted RBP4.33□□□□□ -1.72
VRK1-202ENST00000553683 HKR1P10072 659 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 MALP21145 153 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 FGFR4P22455 802 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 HK3P52790 923 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 USP14P54578 494 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 CXADRP78310 365 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 POU6F2P78424 691 aaPredicted RBP4.33□□□□□ -1.72
VRK1-202ENST00000553683 U2AF1Q01081 240 aaKnown RBP eCLIP4.33□□□□□ -1.72
VRK1-202ENST00000553683 TAP2Q03519 686 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 TTF1Q15361 905 aaPredicted RBP4.33□□□□□ -1.72
VRK1-202ENST00000553683 SP5Q6BEB4 398 aaPredicted RBP4.33□□□□□ -1.72
VRK1-202ENST00000553683 PHACTR3Q96KR7 559 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 TEX101Q9BY14 249 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 KMT5AQ9NQR1 393 aa4.33□□□□□ -1.72
VRK1-202ENST00000553683 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.33□□□□□ -1.72
VRK1-202ENST00000553683 MAST3O60307 1309 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 A0A1W2PS29 197 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 CDHR4A6H8M9 788 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 NT5C1B-RDH14C9J2C7 533 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 RFPL1O75677 317 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 SPDEFO95238 335 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 IL33O95760 270 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 CD1AP06126 327 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 SLC6A2P23975 617 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 ZNF280AP59817 542 aaPredicted RBP4.32□□□□□ -1.72
VRK1-202ENST00000553683 PIGFQ07326 219 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 MCL1Q07820 350 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 SLFN5Q08AF3 891 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 TCF15Q12870 199 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 PIN1Q13526 163 aaPredicted RBP4.32□□□□□ -1.72
VRK1-202ENST00000553683 CYP2A13Q16696 494 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 KHDC1Q4VXA5 237 aaKnown RBP4.32□□□□□ -1.72
VRK1-202ENST00000553683 Q6YL49 198 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 LCORLQ8N3X6 602 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 TBC1D15Q8TC07 691 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 SCAMP4Q969E2 229 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 HOOK2Q96ED9 719 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 AIFM3Q96NN9 605 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 ALOXE3Q9BYJ1 711 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 WDR11Q9BZH6 1224 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 SIK2Q9H0K1 926 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 IKZF4Q9H2S9 585 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 AASDHPPTQ9NRN7 309 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 CFAP97Q9P2B7 532 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 ZDHHC8Q9ULC8 765 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 DMRT1Q9Y5R6 373 aa4.32□□□□□ -1.72
VRK1-202ENST00000553683 LOC105371045A0A1W2PR82 267 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 F2RL2O00254 374 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 LPXNO60711 386 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 PRSS23O95084 383 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 FDXRP22570 491 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 SMARCA1P28370 1054 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 SLC6A4P31645 630 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 VAV2P52735 878 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 NOMO3P69849 1222 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 SCAPQ12770 1279 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 SNAPC2Q13487 334 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 GTF2H3Q13889 308 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 PGS1Q32NB8 556 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 NOMO2Q5JPE7 1267 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 ATAT1Q5SQI0 421 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 UTP14CQ5TAP6 766 aaKnown RBP4.31□□□□□ -1.72
VRK1-202ENST00000553683 SLC4A10Q6U841 1118 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 LNX2Q8N448 690 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 Q8NA96 180 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 SUPT20HQ8NEM7 779 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 DDX17Q92841 729 aaKnown RBP4.31□□□□□ -1.72
VRK1-202ENST00000553683 KAT5Q92993 513 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 HPS3Q969F9 1004 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 C1GALT1C1Q96EU7 318 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 MARS2Q96GW9 593 aaKnown RBP4.31□□□□□ -1.72
VRK1-202ENST00000553683 TTPALQ9BTX7 342 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 GPR35Q9HC97 309 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 TBCCD1Q9NVR7 557 aa4.31□□□□□ -1.72
VRK1-202ENST00000553683 SPATA31A3Q5VYP0 1347 aa4.3□□□□□ -1.72
VRK1-202ENST00000553683 PRAMEF33A0A0G2JMD5 474 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms