RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 MXD4Q14582 209 aaPredicted RBP5.51□□□□□ -1.53
VTI1B-202ENST00000553619 CCL14Q16627 93 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 HSDL1Q3SXM5 330 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 ARSHQ5FYA8 562 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 FAM26FQ5R3K3 315 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 PRAMEF19Q5SWL8 479 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 FOXR2Q6PJQ5 311 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 OGFOD3Q6PK18 319 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 KCNK18Q7Z418 384 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 CCDC60Q8IWA6 550 aaPredicted RBP5.51□□□□□ -1.53
VTI1B-202ENST00000553619 GRAMD1CQ8IYS0 662 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 MYOCDQ8IZQ8 938 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 GUF1Q8N442 669 aaKnown RBP5.51□□□□□ -1.53
VTI1B-202ENST00000553619 PCSK9Q8NBP7 692 aaKnown RBP5.51□□□□□ -1.53
VTI1B-202ENST00000553619 GLIS3Q8NEA6 775 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 ANKRD20A12PQ8NF67 263 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 ENOX1Q8TC92 643 aaKnown RBP5.51□□□□□ -1.53
VTI1B-202ENST00000553619 ATP8B4Q8TF62 1192 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 NOC3LQ8WTT2 800 aaKnown RBP5.51□□□□□ -1.53
VTI1B-202ENST00000553619 ZNF296Q8WUU4 475 aaPredicted RBP5.51□□□□□ -1.53
VTI1B-202ENST00000553619 AFG1LQ8WV93 481 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 ERCC4Q92889 916 aaPredicted RBP5.51□□□□□ -1.53
VTI1B-202ENST00000553619 COPS5Q92905 334 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 DNAJC19Q96DA6 116 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 ASIC4Q96FT7 647 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 SEZ6LQ9BYH1 1024 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 BCO2Q9BYV7 579 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 ARHGAP39Q9C0H5 1083 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 TMEM206Q9H813 350 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 MRPL44Q9H9J2 332 aaKnown RBP5.51□□□□□ -1.53
VTI1B-202ENST00000553619 ATP6V0A4Q9HBG4 840 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 SSU72Q9NP77 194 aaKnown RBP5.51□□□□□ -1.53
VTI1B-202ENST00000553619 OLFML3Q9NRN5 406 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 FLRT1Q9NZU1 646 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 CGNQ9P2M7 1197 aaKnown RBP5.51□□□□□ -1.53
VTI1B-202ENST00000553619 RWDD2AQ9UIY3 292 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 EXOC7Q9UPT5 735 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 COL1A2P08123 1366 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 DOCK5Q9H7D0 1870 aa5.51□□□□□ -1.53
VTI1B-202ENST00000553619 IGSF9BQ9UPX0 1349 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 A0A087WWV3 80 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.5□□□□□ -1.53
VTI1B-202ENST00000553619 FRMD3A2A2Y4 597 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 EIF3DO15371 548 aaKnown RBP eCLIP5.5□□□□□ -1.53
VTI1B-202ENST00000553619 CBFA2T2O43439 604 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 CALUO43852 315 aaPredicted RBP5.5□□□□□ -1.53
VTI1B-202ENST00000553619 ZNF862O60290 1169 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 SORBS3O60504 671 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 USO1O60763 962 aaKnown RBP5.5□□□□□ -1.53
VTI1B-202ENST00000553619 RNGTTO60942 597 aaKnown RBP5.5□□□□□ -1.53
VTI1B-202ENST00000553619 HIP1RO75146 1068 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 CABYRO75952 493 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 PAPLNO95428 1278 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 LGALS2P05162 132 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 RPLP2P05387 115 aaKnown RBP5.5□□□□□ -1.53
VTI1B-202ENST00000553619 TPM3P06753 285 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 TPM2P07951 284 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 MMP3P08254 477 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 MYL3P08590 195 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 CYBAP13498 195 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 PLS3P13797 630 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 JUNBP17275 347 aaPredicted RBP5.5□□□□□ -1.53
VTI1B-202ENST00000553619 CCNE1P24864 410 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 RPL13P26373 211 aaKnown RBP5.5□□□□□ -1.53
VTI1B-202ENST00000553619 CTGFP29279 349 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 GSTT1P30711 240 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 PRCPP42785 496 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 MAPK8P45983 427 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 NKX3-2P78367 333 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 HTRA3P83110 453 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 MYL5Q02045 173 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 LRRC63Q05C16 580 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 POU5F1BQ06416 359 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 SPAG1Q07617 926 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 CACNB2Q08289 660 aaPredicted RBP5.5□□□□□ -1.53
VTI1B-202ENST00000553619 COASYQ13057 564 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 PAK1Q13153 545 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 DMP1Q13316 513 aaPredicted RBP5.5□□□□□ -1.53
VTI1B-202ENST00000553619 FZD5Q13467 585 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 TFDP1Q14186 410 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 PLCB4Q15147 1175 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 PKN2Q16513 984 aaKnown RBP5.5□□□□□ -1.53
VTI1B-202ENST00000553619 MTERF2Q49AM1 385 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 ODR4Q5SWX8 454 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 FAM102BQ5T8I3 360 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 SPATA1Q5VX52 437 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 ANO5Q75V66 913 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 ZNF720Q7Z2F6 126 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 TRMT1LQ7Z2T5 733 aaKnown RBP5.5□□□□□ -1.53
VTI1B-202ENST00000553619 SPRED2Q7Z698 418 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 RNF180Q86T96 592 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 TLK2Q86UE8 772 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 GAS2L3Q86XJ1 694 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 FAM114A1Q8IWE2 563 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 SULF2Q8IWU5 870 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 HOMEZQ8IX15 550 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 FAM178BQ8IXR5 827 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 ADSSL1Q8N142 457 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 ARRDC4Q8NCT1 418 aa5.5□□□□□ -1.53
VTI1B-202ENST00000553619 GOLGA5Q8TBA6 731 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms