RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 I3L4J1 428 aa28.1■■■□□ 2.09
CPSF6-205ENST00000550075 EPCAMP16422 314 aa28.1■■■□□ 2.09
CPSF6-205ENST00000550075 TKTP29401 623 aaKnown RBP28.1■■■□□ 2.09
CPSF6-205ENST00000550075 CYP2J2P51589 502 aa28.1■■■□□ 2.09
CPSF6-205ENST00000550075 PRSS55Q6UWB4 352 aaPredicted RBP28.1■■■□□ 2.09
CPSF6-205ENST00000550075 CD300LGQ6UXG3 332 aa28.1■■■□□ 2.09
CPSF6-205ENST00000550075 XXYLT1Q8NBI6 393 aa28.1■■■□□ 2.09
CPSF6-205ENST00000550075 CACTINQ8WUQ7 758 aaKnown RBP28.1■■■□□ 2.09
CPSF6-205ENST00000550075 FBXL18Q96ME1 805 aa28.1■■■□□ 2.09
CPSF6-205ENST00000550075 XIRP2A4UGR9 3374 aa28.1■■■□□ 2.09
CPSF6-205ENST00000550075 MBTPS2O43462 519 aa28.09■■■□□ 2.09
CPSF6-205ENST00000550075 GUCY2FP51841 1108 aa28.09■■■□□ 2.09
CPSF6-205ENST00000550075 PNOCQ13519 176 aa28.09■■■□□ 2.09
CPSF6-205ENST00000550075 EFCAB13Q8IY85 973 aa28.09■■■□□ 2.09
CPSF6-205ENST00000550075 ZSWIM2Q8NEG5 633 aa28.09■■■□□ 2.09
CPSF6-205ENST00000550075 APPL2Q8NEU8 664 aa28.09■■■□□ 2.09
CPSF6-205ENST00000550075 LNX1Q8TBB1 728 aaPredicted RBP28.09■■■□□ 2.09
CPSF6-205ENST00000550075 DPP3Q9NY33 737 aa28.09■■■□□ 2.09
CPSF6-205ENST00000550075 TCF20Q9UGU0 1960 aaKnown RBP28.09■■■□□ 2.09
CPSF6-205ENST00000550075 ARHGEF37A1IGU5 675 aa28.08■■■□□ 2.09
CPSF6-205ENST00000550075 CLIC2O15247 247 aa28.08■■■□□ 2.09
CPSF6-205ENST00000550075 UBE2HP62256 183 aa28.08■■■□□ 2.09
CPSF6-205ENST00000550075 TFAMQ00059 246 aaKnown RBP28.08■■■□□ 2.09
CPSF6-205ENST00000550075 SNRNP35Q16560 246 aaKnown RBP28.08■■■□□ 2.09
CPSF6-205ENST00000550075 C9orf57Q5W0N0 161 aa28.08■■■□□ 2.09
CPSF6-205ENST00000550075 CBWD2Q8IUF1 395 aa28.08■■■□□ 2.09
CPSF6-205ENST00000550075 GTPBP4Q9BZE4 634 aaKnown RBP28.08■■■□□ 2.09
CPSF6-205ENST00000550075 SFXN1Q9H9B4 322 aa28.08■■■□□ 2.09
CPSF6-205ENST00000550075 MTRRQ9UBK8 725 aa28.08■■■□□ 2.09
CPSF6-205ENST00000550075 PCDHB8Q9UN66 801 aa28.08■■■□□ 2.09
CPSF6-205ENST00000550075 PLXNA3P51805 1871 aa28.07■■■□□ 2.08
CPSF6-205ENST00000550075 H7C4K7 107 aa28.07■■■□□ 2.08
CPSF6-205ENST00000550075 PDXKO00764 312 aa28.07■■■□□ 2.08
CPSF6-205ENST00000550075 TMEM191BP0C7N4 346 aa28.07■■■□□ 2.08
CPSF6-205ENST00000550075 IGFBP6P24592 240 aaPredicted RBP28.07■■■□□ 2.08
CPSF6-205ENST00000550075 ITIH3Q06033 890 aa28.07■■■□□ 2.08
CPSF6-205ENST00000550075 SMAD2Q15796 467 aaKnown RBP28.07■■■□□ 2.08
CPSF6-205ENST00000550075 CES5AQ6NT32 575 aa28.07■■■□□ 2.08
CPSF6-205ENST00000550075 GLYCTKQ8IVS8 523 aa28.07■■■□□ 2.08
CPSF6-205ENST00000550075 ELOA2Q8IYF1 753 aaPredicted RBP28.07■■■□□ 2.08
CPSF6-205ENST00000550075 SMARCE1Q969G3 411 aa28.07■■■□□ 2.08
CPSF6-205ENST00000550075 ZNF560Q96MR9 790 aa28.07■■■□□ 2.08
CPSF6-205ENST00000550075 IPO9Q96P70 1041 aaKnown RBP28.07■■■□□ 2.08
CPSF6-205ENST00000550075 GSDMAQ96QA5 445 aa28.07■■■□□ 2.08
CPSF6-205ENST00000550075 UHRF1Q96T88 793 aaPredicted RBP28.07■■■□□ 2.08
CPSF6-205ENST00000550075 BACE2Q9Y5Z0 518 aa28.07■■■□□ 2.08
CPSF6-205ENST00000550075 A0A0C4DFX4 3053 aa28.07■■■□□ 2.08
CPSF6-205ENST00000550075 TTC28Q96AY4 2481 aa28.06■■■□□ 2.08
CPSF6-205ENST00000550075 EXOC3O60645 756 aa28.06■■■□□ 2.08
CPSF6-205ENST00000550075 GADD45BO75293 160 aaPredicted RBP28.06■■■□□ 2.08
CPSF6-205ENST00000550075 IL9P15248 144 aa28.06■■■□□ 2.08
CPSF6-205ENST00000550075 RPL17P18621 184 aaKnown RBP28.06■■■□□ 2.08
CPSF6-205ENST00000550075 AARSP49588 968 aaKnown RBP eCLIP28.06■■■□□ 2.08
CPSF6-205ENST00000550075 VARS2Q5ST30 1063 aaKnown RBP28.06■■■□□ 2.08
CPSF6-205ENST00000550075 SYCE2Q6PIF2 218 aa28.06■■■□□ 2.08
CPSF6-205ENST00000550075 DSTYKQ6XUX3 929 aa28.06■■■□□ 2.08
CPSF6-205ENST00000550075 GUF1Q8N442 669 aaKnown RBP28.06■■■□□ 2.08
CPSF6-205ENST00000550075 HDAC7Q8WUI4 952 aa28.06■■■□□ 2.08
CPSF6-205ENST00000550075 ANKRD36BP1Q96IX9 119 aa28.06■■■□□ 2.08
CPSF6-205ENST00000550075 KCTD10Q9H3F6 313 aa28.06■■■□□ 2.08
CPSF6-205ENST00000550075 PDE11AQ9HCR9 933 aa28.06■■■□□ 2.08
CPSF6-205ENST00000550075 MAN1C1Q9NR34 630 aa28.06■■■□□ 2.08
CPSF6-205ENST00000550075 USP15Q9Y4E8 981 aaPredicted RBP28.06■■■□□ 2.08
CPSF6-205ENST00000550075 ANO9A1A5B4 782 aa28.05■■■□□ 2.08
CPSF6-205ENST00000550075 CALUO43852 315 aaPredicted RBP28.05■■■□□ 2.08
CPSF6-205ENST00000550075 PNPLA4P41247 253 aa28.05■■■□□ 2.08
CPSF6-205ENST00000550075 ZNF280DQ6N043 979 aa28.05■■■□□ 2.08
CPSF6-205ENST00000550075 PALB2Q86YC2 1186 aa28.05■■■□□ 2.08
CPSF6-205ENST00000550075 FNBP1Q96RU3 617 aa28.05■■■□□ 2.08
CPSF6-205ENST00000550075 PLEKHA4Q9H4M7 779 aa28.05■■■□□ 2.08
CPSF6-205ENST00000550075 PRKAG3Q9UGI9 489 aa28.05■■■□□ 2.08
CPSF6-205ENST00000550075 ITGA11Q9UKX5 1188 aa28.05■■■□□ 2.08
CPSF6-205ENST00000550075 R3HCC1Q9Y3T6 440 aaKnown RBP28.05■■■□□ 2.08
CPSF6-205ENST00000550075 M0QZQ0 153 aa28.04■■■□□ 2.08
CPSF6-205ENST00000550075 PIRO00625 290 aa28.04■■■□□ 2.08
CPSF6-205ENST00000550075 PRPF40AO75400 957 aaKnown RBP28.04■■■□□ 2.08
CPSF6-205ENST00000550075 ODC1P11926 461 aa28.04■■■□□ 2.08
CPSF6-205ENST00000550075 TAF6P49848 677 aa28.04■■■□□ 2.08
CPSF6-205ENST00000550075 USP37Q86T82 979 aa28.04■■■□□ 2.08
CPSF6-205ENST00000550075 SLC9A9Q8IVB4 645 aa28.04■■■□□ 2.08
CPSF6-205ENST00000550075 POP1Q99575 1024 aaKnown RBP28.04■■■□□ 2.08
CPSF6-205ENST00000550075 CLSTN3Q9BQT9 956 aa28.04■■■□□ 2.08
CPSF6-205ENST00000550075 COL25A1Q9BXS0 654 aaPredicted RBP28.04■■■□□ 2.08
CPSF6-205ENST00000550075 NCOR1O75376 2440 aa28.04■■■□□ 2.08
CPSF6-205ENST00000550075 CUL9Q8IWT3 2517 aa28.03■■■□□ 2.08
CPSF6-205ENST00000550075 PPEF2O14830 753 aa28.03■■■□□ 2.08
CPSF6-205ENST00000550075 TGM5O43548 720 aa28.03■■■□□ 2.08
CPSF6-205ENST00000550075 TNNC2P02585 160 aa28.03■■■□□ 2.08
CPSF6-205ENST00000550075 WNT7BP56706 349 aa28.03■■■□□ 2.08
CPSF6-205ENST00000550075 LILRA4P59901 499 aa28.03■■■□□ 2.08
CPSF6-205ENST00000550075 MYBPC2Q14324 1141 aa28.03■■■□□ 2.08
CPSF6-205ENST00000550075 SV2CQ496J9 727 aa28.03■■■□□ 2.08
CPSF6-205ENST00000550075 RARS2Q5T160 578 aaKnown RBP28.03■■■□□ 2.08
CPSF6-205ENST00000550075 WDR49Q8IV35 697 aa28.03■■■□□ 2.08
CPSF6-205ENST00000550075 RDH13Q8NBN7 331 aa28.03■■■□□ 2.08
CPSF6-205ENST00000550075 TMEM174Q8WUU8 243 aa28.03■■■□□ 2.08
CPSF6-205ENST00000550075 RIPOR3Q96MK2 946 aa28.03■■■□□ 2.08
CPSF6-205ENST00000550075 APOL5Q9BWW9 433 aa28.03■■■□□ 2.08
CPSF6-205ENST00000550075 S1PR5Q9H228 398 aa28.03■■■□□ 2.08
CPSF6-205ENST00000550075 ADAM7Q9H2U9 754 aa28.03■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms