RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 CLSTN3Q9BQT9 956 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 CBWD1Q9BRT8 395 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 PHF7Q9BWX1 381 aaPredicted RBP12.89□□□□□ -0.35
YBX3-217ENST00000546164 PLEKHA4Q9H4M7 779 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 GDPD2Q9HCC8 539 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 CD320Q9NPF0 282 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 MTRRQ9UBK8 725 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 NUB1Q9Y5A7 615 aa12.89□□□□□ -0.35
YBX3-217ENST00000546164 PDCD11Q14690 1871 aaKnown RBP12.89□□□□□ -0.35
YBX3-217ENST00000546164 TCHHQ07283 1943 aa12.88□□□□□ -0.35
YBX3-217ENST00000546164 TGM5O43548 720 aa12.88□□□□□ -0.35
YBX3-217ENST00000546164 NFICP08651 508 aa12.88□□□□□ -0.35
YBX3-217ENST00000546164 TKTP29401 623 aaKnown RBP12.88□□□□□ -0.35
YBX3-217ENST00000546164 MTHFRP42898 656 aa12.88□□□□□ -0.35
YBX3-217ENST00000546164 RAB33AQ14088 237 aa12.88□□□□□ -0.35
YBX3-217ENST00000546164 MRPL58Q14197 206 aaKnown RBP12.88□□□□□ -0.35
YBX3-217ENST00000546164 TMEM132DQ14C87 1099 aa12.88□□□□□ -0.35
YBX3-217ENST00000546164 CYP26C1Q6V0L0 522 aa12.88□□□□□ -0.35
YBX3-217ENST00000546164 C15orf39Q6ZRI6 1047 aa12.88□□□□□ -0.35
YBX3-217ENST00000546164 GPR149Q86SP6 731 aa12.88□□□□□ -0.35
YBX3-217ENST00000546164 GRAMD1CQ8IYS0 662 aa12.88□□□□□ -0.35
YBX3-217ENST00000546164 FAM213AQ9BRX8 229 aa12.88□□□□□ -0.35
YBX3-217ENST00000546164 GOLPH3LQ9H4A5 285 aa12.88□□□□□ -0.35
YBX3-217ENST00000546164 MAN1C1Q9NR34 630 aa12.88□□□□□ -0.35
YBX3-217ENST00000546164 ANO9A1A5B4 782 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 LOC730098B7Z3J9 87 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 I3L4J1 428 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 M0QZQ0 153 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 TGFB1I1O43294 461 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 TBC1D4O60343 1298 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 RPL17P18621 184 aaKnown RBP12.87□□□□□ -0.35
YBX3-217ENST00000546164 PSMD2Q13200 908 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 ATAT1Q5SQI0 421 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 VARS2Q5ST30 1063 aaKnown RBP12.87□□□□□ -0.35
YBX3-217ENST00000546164 RARS2Q5T160 578 aaKnown RBP12.87□□□□□ -0.35
YBX3-217ENST00000546164 SLC8B1Q6J4K2 584 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 ARMCX5Q6P1M9 558 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 KRBA2Q6ZNG9 492 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 PALB2Q86YC2 1186 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 GPD1LQ8N335 351 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 C12orf76Q8N812 135 aaPredicted RBP12.87□□□□□ -0.35
YBX3-217ENST00000546164 ZSWIM2Q8NEG5 633 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 APPL2Q8NEU8 664 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 FAM212AQ96EL1 285 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 SAAL1Q96ER3 474 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 RIPOR3Q96MK2 946 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 AGPAT3Q9NRZ7 376 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 ZDHHC7Q9NXF8 308 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 CGNQ9P2M7 1197 aaKnown RBP12.87□□□□□ -0.35
YBX3-217ENST00000546164 FBXW11Q9UKB1 542 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 PCDHB8Q9UN66 801 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 FARP1Q9Y4F1 1045 aaPredicted RBP12.87□□□□□ -0.35
YBX3-217ENST00000546164 VWA8A3KMH1 1905 aa12.87□□□□□ -0.35
YBX3-217ENST00000546164 H7C4K7 107 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 PIRO00625 290 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 ADAM12O43184 909 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 ZNF202O95125 648 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 SSTR3P32745 418 aaPredicted RBP12.86□□□□□ -0.35
YBX3-217ENST00000546164 MCM4P33991 863 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 GUCY2FP51841 1108 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 DPYDQ12882 1025 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 STK4Q13043 487 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 KNOP1Q1ED39 458 aaKnown RBP12.86□□□□□ -0.35
YBX3-217ENST00000546164 KMT5BQ4FZB7 885 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 C9orf57Q5W0N0 161 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 RSPO2Q6UXX9 243 aaPredicted RBP12.86□□□□□ -0.35
YBX3-217ENST00000546164 TMC5Q6UXY8 1006 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 RTL10Q7L3V2 364 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 HS2ST1Q7LGA3 356 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 C12orf56Q8IXR9 622 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 EFCAB13Q8IY85 973 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 KIAA0895Q8NCT3 520 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 KREMEN2Q8NCW0 462 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 GOLGA5Q8TBA6 731 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 TMEM174Q8WUU8 243 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 APOL5Q9BWW9 433 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 KIAA1586Q9HCI6 787 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 SLC39A2Q9NP94 309 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 EXOC1Q9NV70 894 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 RBAKQ9NYW8 714 aaPredicted RBP12.86□□□□□ -0.35
YBX3-217ENST00000546164 HSPBP1Q9NZL4 362 aa12.86□□□□□ -0.35
YBX3-217ENST00000546164 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.85□□□□□ -0.35
YBX3-217ENST00000546164 GOLGA8IPA6NC78 632 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 GOLGA8JA6NMD2 632 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 PPEF2O14830 753 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 ZMYND10O75800 440 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 RHOBTB3O94955 611 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 OAZ2O95190 189 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 POU2F2P09086 479 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 OR1D2P34982 312 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 WNT7BP56706 349 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 LILRA4P59901 499 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 SURF1Q15526 300 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 ZNF280DQ6N043 979 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 KANK3Q6NY19 840 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 GLYCTKQ8IVS8 523 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 FMR1NBQ8N0W7 255 aaPredicted RBP12.85□□□□□ -0.35
YBX3-217ENST00000546164 TMEM130Q8N3G9 435 aa12.85□□□□□ -0.35
YBX3-217ENST00000546164 ZNF707Q96C28 371 aaPredicted RBP12.85□□□□□ -0.35
YBX3-217ENST00000546164 CCDC34Q96HJ3 373 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms