RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 PCDHA6Q9UN73 950 aa10.9□□□□□ -0.67
PCDH9-204ENST00000544246 PCDHA8Q9Y5H6 950 aa10.9□□□□□ -0.67
PCDH9-204ENST00000544246 BIRC5O15392 142 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 TRIM49P0CI25 452 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 TRIM49CP0CI26 452 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 GRIK1P39086 918 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 NDUFA5Q16718 116 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 RESP18Q5W5W9 173 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 ANKS6Q68DC2 871 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 TTC33Q6PID6 262 aaPredicted RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 ENOSF1Q7L5Y1 443 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 ZNF560Q96MR9 790 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 IMPAD1Q9NX62 359 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 LSM7Q9UK45 103 aaKnown RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 PFASO15067 1338 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 F8W810 466 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 AIM2O14862 343 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 ADD2P35612 726 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 ATXN3P54252 364 aaPredicted RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 RPS7P62081 194 aaKnown RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 HIST2H2ACQ16777 129 aaPredicted RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 HIST2H2AA3Q6FI13 130 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 CALML6Q8TD86 181 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 IL17RAQ96F46 866 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 MRPL4Q9BYD3 311 aaKnown RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 KRT84Q9NSB2 600 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 HDAC6Q9UBN7 1215 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 UBTFL6P0CB48 400 aaPredicted RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 SOX11P35716 441 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 ERFP50548 548 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 SESN2P58004 480 aaPredicted RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 CNTN1Q12860 1018 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 TRIP10Q15642 601 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 POTEEQ6S8J3 1075 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 SPATA2LQ8IUW3 424 aaPredicted RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 DNAJC9Q8WXX5 260 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 EPB42P16452 691 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 SLC1A1P43005 524 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 CACNB2Q08289 660 aaPredicted RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 OOSP2Q86WS3 158 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 AHI1Q8N157 1196 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 ATPAF2Q8N5M1 289 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 TERB1Q8NA31 727 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 CNDP1Q96KN2 507 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 PPP1R2P1Q96PQ5 205 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 SLC30A1Q9Y6M5 507 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 LOC102724428A0A0B4J2F2 783 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 ENO4A6NNW6 628 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 FAM47E-STBD1D6RA91 191 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 TNPO2O14787 897 aaKnown RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 TRIM24O15164 1050 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 TCN1P20061 433 aaPredicted RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 ITGAXP20702 1163 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 MZF1P28698 734 aaPredicted RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 RRM2P31350 389 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 SIK1P57059 783 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 BTKQ06187 659 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 KCNH2Q12809 1159 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 USPL1Q5W0Q7 1092 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 C11orf88Q6PI97 169 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 C11orf96Q7Z7L8 435 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 SNRNP27Q8WVK2 155 aaKnown RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 OMA1Q96E52 524 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 CLEC4MQ9H2X3 399 aaPredicted RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 VIPAS39Q9H9C1 493 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 DBNDD1Q9H9R9 158 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 LATS2Q9NRM7 1088 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 RPS6KB2Q9UBS0 482 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 ZMYND8Q9ULU4 1186 aaPredicted RBP10.89□□□□□ -0.67
PCDH9-204ENST00000544246 ABCA6Q8N139 1617 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 TET3O43151 1660 aa10.89□□□□□ -0.67
PCDH9-204ENST00000544246 CPS1P31327 1500 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 DARSP14868 501 aaKnown RBP10.88□□□□□ -0.67
PCDH9-204ENST00000544246 ANXA11P50995 505 aaKnown RBP10.88□□□□□ -0.67
PCDH9-204ENST00000544246 COG2Q14746 738 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 DRAP1Q14919 205 aaPredicted RBP10.88□□□□□ -0.67
PCDH9-204ENST00000544246 ZNF544Q6NX49 715 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 MIGA2Q7L4E1 593 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 SETD3Q86TU7 594 aaPredicted RBP10.88□□□□□ -0.67
PCDH9-204ENST00000544246 PGBD3Q8N328 593 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 C19orf18Q8NEA5 215 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 EPN3Q9H201 632 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 RPRD1BQ9NQG5 326 aaKnown RBP10.88□□□□□ -0.67
PCDH9-204ENST00000544246 TBC1D22BQ9NU19 505 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 GGT7Q9UJ14 662 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 MTO1Q9Y2Z2 717 aaKnown RBP10.88□□□□□ -0.67
PCDH9-204ENST00000544246 ESYT3A0FGR9 886 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 CCND1P24385 295 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 RGS4P49798 205 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 COASYQ13057 564 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 FAM45BPQ6NSW5 357 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 RCOR2Q8IZ40 523 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 LCORLQ8N3X6 602 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 OLFM1Q99784 485 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 ZNF341Q9BYN7 854 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 POLR3FQ9H1D9 316 aaPredicted RBP10.88□□□□□ -0.67
PCDH9-204ENST00000544246 RHBDL2Q9NX52 303 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 PLXNC1O60486 1568 aa10.88□□□□□ -0.67
PCDH9-204ENST00000544246 H2AFYO75367 372 aaKnown RBP10.88□□□□□ -0.67
PCDH9-204ENST00000544246 CAPN1P07384 714 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms