RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	ELMSAN1	Q6PJG2	1045 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	EPM2AIP1	Q7L775	607 aa	Predicted RBP	11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	USP37	Q86T82	979 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	RNF168	Q8IYW5	571 aa	Predicted RBP	11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	CACTIN	Q8WUQ7	758 aa	Known RBP	11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	FAM84A	Q96KN4	292 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	ASB7	Q9H672	318 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	PIDD1	Q9HB75	910 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	RXFP1	Q9HBX9	757 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	PDE11A	Q9HCR9	933 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	AGPAT3	Q9NRZ7	376 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	DZANK1	Q9NVP4	752 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	POLI	Q9UNA4	740 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	CDY1	Q9Y6F8	540 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	CCDC195	A0A1B0GUA6	201 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	TMEM189-UBE2V1	I3L0A0	370 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	TNFRSF10A	O00220	468 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	TGFB1I1	O43294	461 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	EXOC3	O60645	756 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	RFPL2	O75678	378 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	EFEMP2	O95967	443 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	TMEM191B	P0C7N4	346 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	DLAT	P10515	647 aa	Known RBP	11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	CYP3A5	P20815	502 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	FGFR3	P22607	806 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	ELF1	P32519	619 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	WNT7B	P56706	349 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	KCNC3	Q14003	757 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	CBX2	Q14781	532 aa	Predicted RBP	11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	SMAD2	Q15796	467 aa	Known RBP	11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	ZBTB6	Q15916	424 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	CTXN3	Q4LDR2	81 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	VARS2	Q5ST30	1063 aa	Known RBP	11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	PDXDC1	Q6P996	788 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	TMEM184A	Q6ZMB5	413 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	ANKS3	Q6ZW76	656 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	CBWD2	Q8IUF1	395 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	BRSK2	Q8IWQ3	736 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	EFCAB13	Q8IY85	973 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	FMR1NB	Q8N0W7	255 aa	Predicted RBP	11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	GJD3	Q8N144	294 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	CSGALNACT2	Q8N6G5	542 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	SMRP1	Q8NCR6	262 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	KIAA0895	Q8NCT3	520 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	KREMEN2	Q8NCW0	462 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	APPL2	Q8NEU8	664 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	PIK3R5	Q8WYR1	880 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	CCDC127	Q96BQ5	260 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	CLSTN3	Q9BQT9	956 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	S1PR5	Q9H228	398 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	ADAM7	Q9H2U9	754 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	FNIP2	Q9P278	1114 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	DPP7	Q9UHL4	492 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	AGAP1	Q9UPQ3	857 aa		11.96	□□□□□ -0.49
DDB1-222	ENST00000543627	UBE4B	O95155	1302 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	FAM237A	A0A1B0GTK4	181 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627		H7C4K7	107 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	ITGB3	P05106	788 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	MYL1	P05976	194 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	TNNI1	P19237	187 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	LRPAP1	P30533	357 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	POLR2B	P30876	1174 aa	Known RBP	11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	FAM160A1	Q05DH4	1040 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	ITIH3	Q06033	890 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	EHHADH	Q08426	723 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	DPYD	Q12882	1025 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	LIN9	Q5TKA1	542 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	C9orf57	Q5W0N0	161 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	CEP135	Q66GS9	1140 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	RSPO2	Q6UXX9	243 aa	Predicted RBP	11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	XXYLT1	Q8NBI6	393 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	FEZF2	Q8TBJ5	459 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	ANKRD36BP1	Q96IX9	119 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	RIPOR3	Q96MK2	946 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	FNBP1	Q96RU3	617 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	POP1	Q99575	1024 aa	Known RBP	11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	SFXN1	Q9H9B4	322 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	CD320	Q9NPF0	282 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	HOOK1	Q9UJC3	728 aa	Known RBP	11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	PCDHB8	Q9UN66	801 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	DERA	Q9Y315	318 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	C2CD2	Q9Y426	696 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	C5orf42	Q9H799	3197 aa		11.95	□□□□□ -0.5
DDB1-222	ENST00000543627	CYB561D2	O14569	222 aa		11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	PRRG1	O14668	218 aa		11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	SYN3	O14994	580 aa		11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	KIAA0391	O15091	583 aa	Known RBP	11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	CCL16	O15467	120 aa		11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	KIN	O60870	393 aa	Known RBP	11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	PRPF40A	O75400	957 aa	Known RBP	11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	SMC2	O95347	1197 aa		11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	TNNC2	P02585	160 aa		11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	ADRB2	P07550	413 aa		11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	CPB1	P15086	417 aa		11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	MTHFR	P42898	656 aa		11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	LILRA4	P59901	499 aa		11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	YWHAH	Q04917	246 aa	Predicted RBP	11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	BFSP1	Q12934	665 aa		11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	SNRNP35	Q16560	246 aa	Known RBP	11.94	□□□□□ -0.5
DDB1-222	ENST00000543627	PPM1L	Q5SGD2	360 aa		11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms