RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	GZMA	P12544	262 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	CREB1	P16220	341 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	UBA1	P22314	1058 aa	Known RBP	13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	ALDH5A1	P51649	535 aa	Predicted RBP	13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	RWDD2B	P57060	319 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	NLRP11	P59045	1033 aa	Known RBP	13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	CALCOCO2	Q13137	446 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	LY6K	Q17RY6	165 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	C2CD6	Q53TS8	623 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	ZBTB41	Q5SVQ8	909 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	WLS	Q5T9L3	541 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	TAOK1	Q7L7X3	1001 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	TRPM8	Q7Z2W7	1104 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	CROCCP2	Q86T23	111 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	CCDC50	Q8IVM0	306 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	SULF1	Q8IWU6	871 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	SLC17A8	Q8NDX2	589 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	HELQ	Q8TDG4	1101 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	DCPS	Q96C86	337 aa	Known RBP	13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	NT5C1B	Q96P26	610 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	STMN4	Q9H169	189 aa	Predicted RBP	13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	PDLIM7	Q9NR12	457 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	ABCF3	Q9NUQ8	709 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	KIAA1217	Q5T5P2	1943 aa		13.34	□□□□□ -0.27
RNF4-222	ENST00000541204	NFASC	O94856	1347 aa		13.33	□□□□□ -0.27
RNF4-222	ENST00000541204	TP73	O15350	636 aa		13.33	□□□□□ -0.27
RNF4-222	ENST00000541204	DKC1	O60832	514 aa	Known RBP eCLIP	13.33	□□□□□ -0.27
RNF4-222	ENST00000541204	OAT	P04181	439 aa		13.33	□□□□□ -0.27
RNF4-222	ENST00000541204	STRN3	Q13033	797 aa		13.33	□□□□□ -0.27
RNF4-222	ENST00000541204	SPOPL	Q6IQ16	392 aa		13.33	□□□□□ -0.27
RNF4-222	ENST00000541204	TAX1BP1	Q86VP1	789 aa		13.33	□□□□□ -0.27
RNF4-222	ENST00000541204	MORC4	Q8TE76	937 aa		13.33	□□□□□ -0.27
RNF4-222	ENST00000541204	VTI1A	Q96AJ9	217 aa		13.33	□□□□□ -0.27
RNF4-222	ENST00000541204	DNAJC17	Q9NVM6	304 aa	Known RBP	13.33	□□□□□ -0.27
RNF4-222	ENST00000541204	MCM8	Q9UJA3	840 aa		13.33	□□□□□ -0.27
RNF4-222	ENST00000541204	CYP1A2	P05177	515 aa		13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	CHKA	P35790	457 aa		13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	KRT17	Q04695	432 aa		13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	NEDD9	Q14511	834 aa		13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	LBX2	Q6XYB7	198 aa		13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	TRIM50	Q86XT4	487 aa		13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	DEPTOR	Q8TB45	409 aa		13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	DYDC1	Q8WWB3	177 aa		13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	SLC7A3	Q8WY07	619 aa		13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	ZNF516	Q92618	1163 aa		13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	RUNDC3B	Q96NL0	473 aa		13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	TARS2	Q9BW92	718 aa	Known RBP	13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	MLXIPL	Q9NP71	852 aa		13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	AAAS	Q9NRG9	546 aa		13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	CTNNAL1	Q9UBT7	734 aa		13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	POLR2A	P24928	1970 aa	Known RBP	13.33	□□□□□ -0.28
RNF4-222	ENST00000541204	SOWAHB	A6NEL2	793 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	ATP6V1G2	O95670	118 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	CYP11B1	P15538	503 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	GLRA2	P23416	452 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	SGO2	Q562F6	1265 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	BRDT	Q58F21	947 aa	Predicted RBP	13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	NOL9	Q5SY16	702 aa	Known RBP	13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	MFSD5	Q6N075	450 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	TBC1D1	Q86TI0	1168 aa	Predicted RBP	13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	CCDC63	Q8NA47	563 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	GIMAP7	Q8NHV1	300 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	TCP11	Q8WWU5	503 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	ATG4A	Q8WYN0	398 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	MFSD14A	Q96MC6	490 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	FNBP1	Q96RU3	617 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	NSRP1	Q9H0G5	558 aa	Known RBP	13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	LRRC19	Q9H756	370 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	RNF181	Q9P0P0	153 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	ARHGAP28	Q9P2N2	729 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	BAIAP2L1	Q9UHR4	511 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	PARP14	Q460N5	1801 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	LOXHD1	Q8IVV2	1947 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204		K7ERI5	159 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	MAPK13	O15264	365 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	SNX3	O60493	162 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	SNRPF	P62306	86 aa	Known RBP	13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	TRIP13	Q15645	432 aa	Predicted RBP	13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	ZNF568	Q3ZCX4	644 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	C12orf50	Q8NA57	414 aa	Predicted RBP	13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	CHST13	Q8NET6	341 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	PSPC1	Q8WXF1	523 aa	Known RBP	13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	SHC3	Q92529	594 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	ARHGEF2	Q92974	986 aa	Known RBP	13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	TBC1D31	Q96DN5	1066 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	HAPLN2	Q9GZV7	340 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	SPATC1L	Q9H0A9	340 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	C17orf75	Q9HAS0	396 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	CHST7	Q9NS84	486 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	FBXO40	Q9UH90	709 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	ASIC3	Q9UHC3	531 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	GTF3C4	Q9UKN8	822 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	AGAP1	Q9UPQ3	857 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	PTPRJ	Q12913	1337 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	TMEM120B	A0PK00	339 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	TCP11X1	B4DZS4	312 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	GSTA1	P08263	222 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	CLTA	P09496	248 aa		13.32	□□□□□ -0.28
RNF4-222	ENST00000541204	PDE6C	P51160	858 aa		13.32	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms