RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 THRAP10827 490 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 IREB2P48200 963 aaKnown RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 AKIRIN2Q53H80 203 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.17□□□□□ -0.94
YBX3-208ENST00000540447 TRPV5Q9NQA5 729 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 PIH1D3Q9NQM4 214 aaKnown RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 FAM8A1Q9UBU6 413 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 KIAA1024Q9UPX6 916 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 TDRKHQ9Y2W6 561 aaKnown RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 PTPRGP23470 1445 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 FGAP02671 866 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 MTA1Q13330 715 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 SLC10A5Q5PT55 438 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 IKBIPQ70UQ0 350 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 DDIASQ8IXT1 998 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 OR6Y1Q8NGX8 325 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 DIS3LQ8TF46 1054 aaKnown RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 PDCD6IPQ8WUM4 868 aaKnown RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 KLF6Q99612 283 aaPredicted RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 SENP7Q9BQF6 1050 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 NUP85Q9BW27 656 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 SAR1AQ9NR31 198 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 PCDH11XQ9BZA7 1347 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 LRRIQ4A6NIV6 560 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 PLCG1P19174 1290 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 RIPK1Q13546 671 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 PAPD7Q5XG87 772 aaKnown RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 PPP4R3CPQ6ZMV5 832 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 CCDC117Q8IWD4 279 aaPredicted RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 SLFN12Q8IYM2 578 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 RASSF5Q8WWW0 418 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 ZSCAN10Q96SZ4 725 aaPredicted RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 CHMP1AQ9HD42 196 aaPredicted RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 ADD3Q9UEY8 706 aaKnown RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 DDX25Q9UHL0 483 aaKnown RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 NOS1APO75052 506 aaPredicted RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 CBX6O95503 412 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 MAGEA4P43358 317 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 DLG4P78352 724 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 EPS8Q12929 822 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 PTK7Q13308 1070 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 SPIDRQ14159 915 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 MTHFSDQ2M296 383 aaKnown RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 PSMA8Q8TAA3 256 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 GPKOWQ92917 476 aaPredicted RBP eCLIP9.17□□□□□ -0.94
YBX3-208ENST00000540447 RNF26Q9BY78 433 aaPredicted RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 RHOBTB2Q9BYZ6 727 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 KRT84Q9NSB2 600 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 DMGDHQ9UI17 866 aaKnown RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 CDY2AQ9Y6F7 541 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 CDY1Q9Y6F8 540 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 V9GYQ6 96 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 SPDYE2BA6NHP3 402 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 SPDYE6P0CI01 402 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 COX10Q12887 443 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 SKA2Q8WVK7 121 aaPredicted RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 RNF25Q96BH1 459 aaPredicted RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 ATP8A2Q9NTI2 1148 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 NMRK1Q9NWW6 199 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 WDR35Q9P2L0 1181 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 CHKBQ9Y259 395 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 ADGRF5Q8IZF2 1346 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 FOXN3O00409 490 aaPredicted RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 CLOCKO15516 846 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 MTSS1O43312 755 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 SOX11P35716 441 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 NUP62P37198 522 aaPredicted RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 EXOSC10Q01780 885 aaKnown RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 POU5F1BQ06416 359 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 NECTIN1Q15223 517 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 TRADDQ15628 312 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 EZH2Q15910 746 aaKnown RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 SPDYE2Q495Y8 402 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 TTMPQ5BVD1 217 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 KAT2BQ92831 832 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 SUCLG2Q96I99 432 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 FOXP3Q9BZS1 431 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 ZNF556Q9HAH1 456 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 MRPL39Q9NYK5 338 aaKnown RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 ADAM30Q9UKF2 790 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 NEU2Q9Y3R4 380 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 PFASO15067 1338 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 EME2A4GXA9 379 aaPredicted RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 TRIM49D1C9J1S8 452 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 GYPCP04921 128 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 CSTF3Q12996 717 aaKnown RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 ACAP2Q15057 778 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 RASSF6Q6ZTQ3 369 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 SRBD1Q8N5C6 995 aaKnown RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 AENQ8WTP8 325 aaKnown RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 WDR12Q9GZL7 423 aaKnown RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 HDHD2Q9H0R4 259 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 PCMTD2Q9NV79 361 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 CCRL2O00421 344 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 AP5Z1O43299 807 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 UNC5CO95185 931 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 AKR1B1P15121 316 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 ZNF12P17014 697 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 ZAP70P43403 619 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms