RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 TRIM59Q8IWR1 403 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 FBXO22Q8NEZ5 403 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 ENOX1Q8TC92 643 aaKnown RBP14.05□□□□□ -0.16
CCDC42-202ENST00000539522 ANP32BQ92688 251 aaKnown RBP14.05□□□□□ -0.16
CCDC42-202ENST00000539522 TSPAN18Q96SJ8 248 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 TSG101Q99816 390 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 PLVAPQ9BX97 442 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 PRDM12Q9H4Q4 367 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 SLC38A7Q9NVC3 462 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 FAN1Q9Y2M0 1017 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 COL6A3P12111 3177 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 PLXNA3P51805 1871 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 GOLGA6L19H0YKK7 550 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 IKBKBO14920 756 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 FSCN2O14926 492 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 LILRB3O75022 631 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 ITGB3P05106 788 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 RB1P06400 928 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 ENPEPQ07075 957 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 GPM6BQ13491 265 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 ZACNQ401N2 412 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 CBWD6Q4V339 395 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 TIGD5Q53EQ6 642 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 HSP90AA4PQ58FG1 418 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 CBWD3Q5JTY5 395 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 CBWD5Q5RIA9 395 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 SPOUT1Q5T280 376 aaKnown RBP14.04□□□□□ -0.16
CCDC42-202ENST00000539522 SV2AQ7L0J3 742 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 APTXQ7Z2E3 356 aaKnown RBP14.04□□□□□ -0.16
CCDC42-202ENST00000539522 TRAPPC11Q7Z392 1133 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 NT5DC4Q86YG4 428 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 SAMD11Q96NU1 681 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 FAM193BQ96PV7 902 aaPredicted RBP14.04□□□□□ -0.16
CCDC42-202ENST00000539522 XYLT2Q9H1B5 865 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 SPG21Q9NZD8 308 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 ADAM28Q9UKQ2 775 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 FRMD4BQ9Y2L6 1034 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 PRUNE2Q8WUY3 3088 aa14.04□□□□□ -0.16
CCDC42-202ENST00000539522 ZNF18P17022 549 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 POLR2BP30876 1174 aaKnown RBP14.03□□□□□ -0.16
CCDC42-202ENST00000539522 RPL9P32969 192 aaKnown RBP14.03□□□□□ -0.16
CCDC42-202ENST00000539522 GCLMP48507 274 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 ALDH7A1P49419 539 aaKnown RBP14.03□□□□□ -0.16
CCDC42-202ENST00000539522 LILRA4P59901 499 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 TPM4P67936 248 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 FUT10Q6P4F1 479 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 DCLRE1AQ6PJP8 1040 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 INTS8Q75QN2 995 aaKnown RBP14.03□□□□□ -0.16
CCDC42-202ENST00000539522 FRMD5Q7Z6J6 570 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 DDX53Q86TM3 631 aaKnown RBP14.03□□□□□ -0.16
CCDC42-202ENST00000539522 LUZP1Q86V48 1076 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 BEST2Q8NFU1 509 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 POF1BQ8WVV4 589 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 SEMA4DQ92854 862 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 CNOT6LQ96LI5 555 aaKnown RBP14.03□□□□□ -0.16
CCDC42-202ENST00000539522 UROC1Q96N76 676 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 ZBP1Q9H171 429 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 CHST7Q9NS84 486 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 FANCLQ9NW38 375 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 MTMR10Q9NXD2 777 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 RWDD3Q9Y3V2 267 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 NFE2L3Q9Y4A8 694 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 NME7Q9Y5B8 376 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 PCDHB12Q9Y5F1 795 aa14.03□□□□□ -0.16
CCDC42-202ENST00000539522 B3GAT3O94766 335 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 EPB41P11171 864 aaKnown RBP14.02□□□□□ -0.17
CCDC42-202ENST00000539522 TNNI1P19237 187 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 DEKP35659 375 aaKnown RBP14.02□□□□□ -0.17
CCDC42-202ENST00000539522 SURF1Q15526 300 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 DUOXA2Q1HG44 320 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 MIIPQ5JXC2 388 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 RTP2Q5QGT7 225 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 ZNF697Q5TEC3 545 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 KIAA0319Q5VV43 1072 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 RSPO2Q6UXX9 243 aaPredicted RBP14.02□□□□□ -0.17
CCDC42-202ENST00000539522 LIMS2Q7Z4I7 341 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 AOPEPQ8N6M6 819 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 TAS1R2Q8TE23 839 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 AUTS2Q8WXX7 1259 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 THAP9Q9H5L6 903 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 AAASQ9NRG9 546 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 AGAP1Q9UPQ3 857 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 LZTS1Q9Y250 596 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 MYO7AQ13402 2215 aa14.02□□□□□ -0.17
CCDC42-202ENST00000539522 HIDE1A8MVS5 230 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 M0QZQ0 153 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 CSPG5O95196 566 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 TMEM191BP0C7N4 346 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 POU3F3P20264 500 aaPredicted RBP14.01□□□□□ -0.17
CCDC42-202ENST00000539522 FGFR3P22607 806 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 TKTP29401 623 aaKnown RBP14.01□□□□□ -0.17
CCDC42-202ENST00000539522 PPM1AP35813 382 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 MYL6P60660 151 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 DPY19L2P1Q6NXN4 242 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 ADGRD2Q7Z7M1 963 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 LMO3Q8TAP4 145 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 DDX27Q96GQ7 796 aaKnown RBP14.01□□□□□ -0.17
CCDC42-202ENST00000539522 SUSD3Q96L08 255 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 FNBP1Q96RU3 617 aa14.01□□□□□ -0.17
CCDC42-202ENST00000539522 CDX2Q99626 313 aaPredicted RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms