RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 SLMAPQ14BN4 828 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 PLCB4Q15147 1175 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 PTPROQ16827 1216 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 FAM187BQ17R55 369 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 LY6KQ17RY6 165 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 TMEM132AQ24JP5 1023 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 ZNF568Q3ZCX4 644 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 FAM153CQ494X1 144 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 ATF7IP2Q5U623 682 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 NAA35Q5VZE5 725 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 CCDC62Q6P9F0 684 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 CCDC137Q6PK04 289 aaKnown RBP7.07□□□□□ -1.28
USP28-206ENST00000538224 TMEM270Q6UE05 265 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 TSHZ1Q6ZSZ6 1077 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 PAXIP1Q6ZW49 1069 aaPredicted RBP7.07□□□□□ -1.28
USP28-206ENST00000538224 TMC3Q7Z5M5 1100 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 ZNF467Q7Z7K2 595 aaPredicted RBP7.07□□□□□ -1.28
USP28-206ENST00000538224 SPATS2Q86XZ4 545 aaKnown RBP7.07□□□□□ -1.28
USP28-206ENST00000538224 JAMLQ86YT9 394 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 IFNLR1Q8IU57 520 aaPredicted RBP7.07□□□□□ -1.28
USP28-206ENST00000538224 RHOT1Q8IXI2 618 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 RNF149Q8NC42 400 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 TMEM35BQ8NCS4 154 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 BBOF1Q8ND07 529 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 UBLCP1Q8WVY7 318 aaPredicted RBP7.07□□□□□ -1.28
USP28-206ENST00000538224 CNKSR2Q8WXI2 1034 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 ZNF516Q92618 1163 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 MAGOHBQ96A72 148 aaKnown RBP7.07□□□□□ -1.28
USP28-206ENST00000538224 OPTNQ96CV9 577 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 PI4K2AQ9BTU6 479 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 LRRC19Q9H756 370 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 PARVAQ9NVD7 372 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 ADAM22Q9P0K1 906 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 IP6K2Q9UHH9 426 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 FAM153AQ9UHL3 310 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 CPSF3Q9UKF6 684 aaKnown RBP7.07□□□□□ -1.28
USP28-206ENST00000538224 STRIP2Q9ULQ0 834 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 PLAAQ9Y263 795 aa7.07□□□□□ -1.28
USP28-206ENST00000538224 PTPRJQ12913 1337 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 FSCN2O14926 492 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 ATMINO43313 823 aaPredicted RBP7.06□□□□□ -1.28
USP28-206ENST00000538224 STRNO43815 780 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 FAM189A1O60320 539 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 B4GALT4O60513 344 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 ARIH2O95376 493 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 GH1P01241 217 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 NUDT17P0C025 328 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 TXNP10599 105 aaKnown RBP7.06□□□□□ -1.28
USP28-206ENST00000538224 MCF2P10911 925 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 CETPP11597 493 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 HARSP12081 509 aaKnown RBP7.06□□□□□ -1.28
USP28-206ENST00000538224 PROZP22891 400 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 TMOD1P28289 359 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 POLR2BP30876 1174 aaKnown RBP7.06□□□□□ -1.28
USP28-206ENST00000538224 EPHX2P34913 555 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 COILP38432 576 aaPredicted RBP7.06□□□□□ -1.28
USP28-206ENST00000538224 COPS2P61201 443 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 MRPS25P82663 173 aaKnown RBP7.06□□□□□ -1.28
USP28-206ENST00000538224 LMNB2Q03252 620 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 IFFO1Q0D2I5 559 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 CALCOCO2Q13137 446 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 ZNF211Q13398 564 aaPredicted RBP7.06□□□□□ -1.28
USP28-206ENST00000538224 IRF5Q13568 498 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 PPP1R7Q15435 360 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 SGO2Q562F6 1265 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 TTMPQ5BVD1 217 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 CEP85LQ5SZL2 805 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 C9orf131Q5VYM1 1079 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 PLEKHA7Q6IQ23 1121 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 NT5DC4Q86YG4 428 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 CCDC105Q8IYK2 499 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 KATNAL2Q8IYT4 538 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 UBR7Q8N806 425 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 PRELID2Q8N945 189 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 CCHCR1Q8TD31 782 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 RIN2Q8WYP3 895 aaPredicted RBP7.06□□□□□ -1.28
USP28-206ENST00000538224 KRT35Q92764 455 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 EMID1Q96A84 441 aaPredicted RBP7.06□□□□□ -1.28
USP28-206ENST00000538224 RBM41Q96IZ5 413 aaKnown RBP7.06□□□□□ -1.28
USP28-206ENST00000538224 CLMNQ96JQ2 1002 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 ZBTB45Q96K62 511 aaPredicted RBP7.06□□□□□ -1.28
USP28-206ENST00000538224 FGD4Q96M96 766 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 HAPLN2Q9GZV7 340 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 MIS12Q9H081 205 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 DPH5Q9H2P9 285 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 FZD8Q9H461 694 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 CNOT10Q9H9A5 744 aaKnown RBP7.06□□□□□ -1.28
USP28-206ENST00000538224 APOBEC3GQ9HC16 384 aaKnown RBP7.06□□□□□ -1.28
USP28-206ENST00000538224 TMBIM4Q9HC24 238 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.06□□□□□ -1.28
USP28-206ENST00000538224 WHRNQ9P202 907 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 RBPJLQ9UBG7 517 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 ZHX1Q9UKY1 873 aaPredicted RBP7.06□□□□□ -1.28
USP28-206ENST00000538224 PCDHGC3Q9UN70 934 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 TNFSF13BQ9Y275 285 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 TELO2Q9Y4R8 837 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 IVNS1ABPQ9Y6Y0 642 aa7.06□□□□□ -1.28
USP28-206ENST00000538224 MROH7Q68CQ1 1323 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 RBM47A0AV96 593 aaKnown RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 ZBTB42B2RXF5 422 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms