RNA–Protein interactions for RNA: ENST00000536301.1

CHD4-205, Transcript of chromodomain helicase DNA binding protein 4, human

TSL 3

Gene CHD4, Length 107 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD4-205	ENST00000536301	ESYT1	Q9BSJ8	1104 aa		5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	MKNK1	Q9BUB5	465 aa		5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	SLC26A6	Q9BXS9	759 aa		5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	LRRC3	Q9BY71	257 aa		5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	CRISPLD1	Q9H336	500 aa		5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	PDZD7	Q9H5P4	517 aa		5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	TRPV4	Q9HBA0	871 aa		5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	CYP4F11	Q9HBI6	524 aa		5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	NCOA5	Q9HCD5	579 aa	Known RBP	5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	FBRSL1	Q9HCM7	1045 aa	Known RBP	5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	KCNMB3	Q9NPA1	279 aa		5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	DDX25	Q9UHL0	483 aa	Known RBP	5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	INVS	Q9Y283	1065 aa		5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	GDA	Q9Y2T3	454 aa		5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	BACE2	Q9Y5Z0	518 aa		5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	SHROOM3	Q8TF72	1996 aa		5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	TNRC6B	Q9UPQ9	1833 aa	Known RBP	5.78	□□□□□ -1.48
CHD4-205	ENST00000536301	SPAAR	A0A1B0GVQ0	90 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301		A0A1W2PRU2	124 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	FAM205C	A6NFA0	338 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	OTOL1	A6NHN0	477 aa	Predicted RBP	5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	TMEM189-UBE2V1	I3L0A0	370 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	PRRG1	O14668	218 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	CHAD	O15335	359 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	FOXD2	O60548	495 aa	Predicted RBP	5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	B3GAT3	O94766	335 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	PRAMEF12	O95522	483 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	P4HB	P07237	508 aa	Known RBP	5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	CCDC192	P0DO97	292 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	U2AF2	P26368	475 aa	Known RBP eCLIP	5.77	□□□□□ -1.49	2e-8	■□□□□ 10.4
CHD4-205	ENST00000536301	CDR1	P51861	262 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	EPHA5	P54756	1037 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	NLRP5	P59047	1200 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	CACNB1	Q02641	598 aa	Predicted RBP	5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	CREB5	Q02930	508 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	SPIRE1	Q08AE8	756 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	FCHO2	Q0JRZ9	810 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	TWF1	Q12792	350 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	ELAVL2	Q12926	359 aa	Known RBP	5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	EPHA7	Q15375	998 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	UAP1L1	Q3KQV9	507 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	NCAPH2	Q6IBW4	605 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	SLC8B1	Q6J4K2	584 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	FSTL4	Q6MZW2	842 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301		Q6ZUG5	572 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	SKAP1	Q86WV1	359 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	TMC8	Q8IU68	726 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	C4orf19	Q8IY42	314 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	HACE1	Q8IYU2	909 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	CEP120	Q8N960	986 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	ZNF461	Q8TAF7	563 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	RIN3	Q8TB24	985 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	CSGALNACT1	Q8TDX6	532 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	TCP11	Q8WWU5	503 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	PPP1R10	Q96QC0	940 aa	Known RBP	5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	SMG9	Q9H0W8	520 aa	Known RBP	5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	POLR3F	Q9H1D9	316 aa	Predicted RBP	5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	DNAJC25	Q9H1X3	360 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	SLK	Q9H2G2	1235 aa	Predicted RBP	5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	POLD4	Q9HCU8	107 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	ANO2	Q9NQ90	1003 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	FSCN3	Q9NQT6	498 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	VPS45	Q9NRW7	570 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	FBXL5	Q9UKA1	691 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	PCDHGA5	Q9Y5G8	931 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	MYOF	Q9NZM1	2061 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	KNL1	Q8NG31	2342 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	NID2	Q14112	1375 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	ZMYM2	Q9UBW7	1377 aa		5.77	□□□□□ -1.49
CHD4-205	ENST00000536301	CEP192	Q8TEP8	1941 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	BCLAF3	A2AJT9	711 aa	Known RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	TMEM8B	A6NDV4	472 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	LRRIQ4	A6NIV6	560 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	ZNF197	O14709	1029 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	MEFV	O15553	781 aa	Predicted RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	USO1	O60763	962 aa	Known RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	SOAT2	O75908	522 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	MICAL2	O94851	1124 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	SLITRK3	O94933	977 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	CAVIN2	O95810	425 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	EGF	P01133	1207 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	OR4Q2	P0C623	313 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	ATF2	P15336	505 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	LIG1	P18858	919 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	BCKDHB	P21953	392 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	ELF1	P32519	619 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	FAM193A	P78312	1265 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	CCT2	P78371	535 aa	Known RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	IRX4	P78413	519 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	TFDP1	Q14186	410 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	MRPL58	Q14197	206 aa	Known RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	MXD4	Q14582	209 aa	Predicted RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	UPP1	Q16831	310 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	COL28A1	Q2UY09	1125 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	EARS2	Q5JPH6	523 aa	Known RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	DGKK	Q5KSL6	1271 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	CYP4A22	Q5TCH4	519 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	PDXDC1	Q6P996	788 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	PPP4R3CP	Q6ZMV5	832 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	RNF19B	Q6ZMZ0	732 aa		5.76	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms