RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 KLHL10Q6JEL2 608 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 PRR5LQ6MZQ0 368 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 LMBR1LQ6UX01 489 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 CACNA2D4Q7Z3S7 1137 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 CROCCP2Q86T23 111 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 MTDHQ86UE4 582 aaKnown RBP7.17□□□□□ -1.26
USP28-202ENST00000535607 SGMS1Q86VZ5 419 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 MREGQ8N565 214 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 ACRBPQ8NEB7 543 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 TTLL11Q8NHH1 800 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 ZNF473Q8WTR7 871 aaKnown RBP7.17□□□□□ -1.26
USP28-202ENST00000535607 TCP11Q8WWU5 503 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 ZKSCAN4Q969J2 545 aaPredicted RBP7.17□□□□□ -1.26
USP28-202ENST00000535607 LRRC45Q96CN5 670 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 HOOK2Q96ED9 719 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 ANKRD27Q96NW4 1050 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 CLIC6Q96NY7 704 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 MMS19Q96T76 1030 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 MCMBPQ9BTE3 642 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 MTFR1LQ9H019 292 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 CENPHQ9H3R5 247 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 PLEKHA4Q9H4M7 779 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 THAP9Q9H5L6 903 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 SPATS2LQ9NUQ6 558 aaKnown RBP7.17□□□□□ -1.26
USP28-202ENST00000535607 CAPN11Q9UMQ6 739 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.17□□□□□ -1.26
USP28-202ENST00000535607 COL11A2P13942 1736 aaPredicted RBP7.17□□□□□ -1.26
USP28-202ENST00000535607 ARAP2Q8WZ64 1704 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 MYH7P12883 1935 aa7.17□□□□□ -1.26
USP28-202ENST00000535607 A0A1B0GUL6 1792 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 TMEM82A0PJX8 343 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 KLRG2A4D1S0 409 aaPredicted RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 GRID2IPA4D2P6 1211 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 ANKRD62A6NC57 917 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 CFAP73A6NFT4 308 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 ANKRD65E5RJM6 399 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 SH2B2O14492 632 aaPredicted RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 PSMA7O14818 248 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 TEX33O43247 280 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 NEBLO76041 1014 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 SERPINB2P05120 415 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 MMP10P09238 476 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 NR1D1P20393 614 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 LSP1P33241 339 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 MDH1P40925 334 aaKnown RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 KIR2DL1P43626 348 aaPredicted RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 KIR2DL2P43627 348 aaPredicted RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 RFX5P48382 616 aaPredicted RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 FXR1P51114 621 aaKnown RBP eCLIP7.16□□□□□ -1.26
USP28-202ENST00000535607 GTF2A2P52657 109 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 TNNC1P63316 161 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 ZBED6P86452 979 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 LRP8Q14114 963 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 KRT31Q15323 416 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 PTGISQ16647 500 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 FNDC3BQ53EP0 1204 aaKnown RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 HSP90AA4PQ58FG1 418 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 FIGNQ5HY92 759 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 EPHA10Q5JZY3 1008 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 ZNF658Q5TYW1 1059 aaPredicted RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 NAA35Q5VZE5 725 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 RRAGBQ5VZM2 374 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 EGFLAMQ63HQ2 1017 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 KCNV1Q6PIU1 500 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 TMED8Q6PL24 325 aaPredicted RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 APOA5Q6Q788 366 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 CRELD2Q6UXH1 353 aaPredicted RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 CEP128Q6ZU80 1094 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 CHST3Q7LGC8 479 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 SPRED2Q7Z698 418 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 NLRP14Q86W24 1093 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 FOXP4Q8IVH2 680 aaPredicted RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 DIS3L2Q8IYB7 885 aaKnown RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 CACNA2D3Q8IZS8 1091 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 RNF10Q8N5U6 811 aaKnown RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 ATRIPQ8WXE1 791 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 KAT2BQ92831 832 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 KISS1RQ969F8 398 aaPredicted RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 EDC3Q96F86 508 aaKnown RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 PAGE5Q96GU1 130 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 MAP6Q96JE9 813 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 CCDC42Q96M95 316 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 SH3GL3Q99963 347 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 ZFYVE21Q9BQ24 234 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 PHF20Q9BVI0 1012 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 BRIP1Q9BX63 1249 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 SLC26A6Q9BXS9 759 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 CNOT10Q9H9A5 744 aaKnown RBP7.16□□□□□ -1.26
USP28-202ENST00000535607 SNX12Q9UMY4 172 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 PRKAB1Q9Y478 270 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 CD2APQ9Y5K6 639 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 NID2Q14112 1375 aa7.16□□□□□ -1.26
USP28-202ENST00000535607 ECM29Q5VYK3 1845 aa7.15□□□□□ -1.26
USP28-202ENST00000535607 MYO5AQ9Y4I1 1855 aaKnown RBP7.15□□□□□ -1.26
USP28-202ENST00000535607 FITM1A5D6W6 292 aa7.15□□□□□ -1.26
USP28-202ENST00000535607 GMNCA6NCL1 334 aa7.15□□□□□ -1.26
USP28-202ENST00000535607 WTIPA6NIX2 430 aaPredicted RBP7.15□□□□□ -1.26
USP28-202ENST00000535607 LGALS16A8MUM7 142 aa7.15□□□□□ -1.26
USP28-202ENST00000535607 GCOM1H8Y6P7 765 aaPredicted RBP7.15□□□□□ -1.26
USP28-202ENST00000535607 AGPSO00116 658 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms