RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	DNASE1L2	Q92874	299 aa		12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	MRRF	Q96E11	262 aa	Known RBP	12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	MS4A3	Q96HJ5	214 aa		12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	KXD1	Q9BQD3	176 aa		12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	NTPCR	Q9BSD7	190 aa	Known RBP	12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	CCDC94	Q9BW85	323 aa	Predicted RBP	12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	FAM126A	Q9BYI3	521 aa	Predicted RBP	12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	C17orf75	Q9HAS0	396 aa		12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	TRPV5	Q9NQA5	729 aa		12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	SPATA6	Q9NWH7	488 aa	Predicted RBP	12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	MRPS17	Q9Y2R5	130 aa	Known RBP	12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	ADGRG1	Q9Y653	693 aa		12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	DMD	P11532	3685 aa		12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	FANCM	Q8IYD8	2048 aa		12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	DCHS1	Q96JQ0	3298 aa		12.65	□□□□□ -0.38
CTNND1-238	ENST00000534647	DOCK6	Q96HP0	2047 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	SHISA7	A6NL88	538 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647		H7C4K7	107 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	ZNF197	O14709	1029 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	LILRB5	O75023	590 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	MCF2	P10911	925 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	LIG1	P18858	919 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	PROZ	P22891	400 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	BRCC3	P46736	316 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	NPTX2	P47972	431 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	ROR1	Q01973	937 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	CACNB1	Q02641	598 aa	Predicted RBP	12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	SOX4	Q06945	474 aa	Predicted RBP	12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	UBXN2B	Q14CS0	331 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	SLC5A9	Q2M3M2	681 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	PRSS36	Q5K4E3	855 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	TTC38	Q5R3I4	469 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	POTEH	Q6S545	545 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	ZNF852	Q6ZMS4	543 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	DGLUCY	Q7Z3D6	616 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	ZNF687	Q8N1G0	1237 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	MCRS1	Q96EZ8	462 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	C8orf76	Q96K31	380 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	KIF2C	Q99661	725 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	KIFC3	Q9BVG8	833 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	PLA2G2F	Q9BZM2	168 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	CDT1	Q9H211	546 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	GOLGA2P5	Q9HBQ8	144 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	ZSCAN32	Q9NX65	697 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	ARHGAP28	Q9P2N2	729 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	LRWD1	Q9UFC0	647 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	LIMCH1	Q9UPQ0	1083 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	KIAA1024	Q9UPX6	916 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	VWA8	A3KMH1	1905 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	NOTCH4	Q99466	2003 aa		12.64	□□□□□ -0.39
CTNND1-238	ENST00000534647	GPR179	Q6PRD1	2367 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	WDR27	A2RRH5	827 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	PODXL	O00592	558 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	MAN2B1	O00754	1011 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	ABLIM1	O14639	778 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	LRG1	P02750	347 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	SDHB	P21912	280 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	ELF1	P32519	619 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	CSTF1	Q05048	431 aa	Known RBP	12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	ADCY1	Q08828	1119 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	QPCT	Q16769	361 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	VARS2	Q5ST30	1063 aa	Known RBP	12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	TANGO2	Q6ICL3	276 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	TAS1R3	Q7RTX0	852 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	DAW1	Q8N136	415 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	PDCD7	Q8N8D1	485 aa	Known RBP	12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	ATRIP	Q8WXE1	791 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	ING5	Q8WYH8	240 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	ZMAT2	Q96NC0	199 aa	Known RBP	12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	ACAP3	Q96P50	834 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	IER2	Q9BTL4	223 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	MRPL4	Q9BYD3	311 aa	Known RBP	12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	RAB34	Q9BZG1	259 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	EPC1	Q9H2F5	836 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	ALG2	Q9H553	416 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	POLD4	Q9HCU8	107 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	PRMT8	Q9NR22	394 aa	Predicted RBP	12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	CNTN3	Q9P232	1028 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	KCNG1	Q9UIX4	513 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	DNM3	Q9UQ16	869 aa		12.63	□□□□□ -0.39
CTNND1-238	ENST00000534647	MYH15	Q9Y2K3	1946 aa		12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	CEP250	Q9BV73	2442 aa		12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647		I3L4J1	428 aa		12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	LAD1	O00515	517 aa		12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	PRRG1	O14668	218 aa		12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	HSP90AA1	P07900	732 aa	Known RBP	12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	CD72	P21854	359 aa		12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	FCAR	P24071	287 aa		12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	U2AF2	P26368	475 aa	Known RBP eCLIP	12.62	□□□□□ -0.39	1e-10	■□□□□ 9.4
CTNND1-238	ENST00000534647	TARS	P26639	723 aa	Known RBP	12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	FOSB	P53539	338 aa		12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	EPHA5	P54756	1037 aa		12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	MLLT6	P55198	1093 aa	Predicted RBP	12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	PEX3	P56589	373 aa		12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	HMGN5	P82970	282 aa	Known RBP	12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	GUCY1B3	Q02153	619 aa		12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	TSR1	Q2NL82	804 aa	Known RBP	12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	ZNF568	Q3ZCX4	644 aa		12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	TPRG1	Q6ZUI0	275 aa		12.62	□□□□□ -0.39
CTNND1-238	ENST00000534647	C1orf186	Q6ZWK4	172 aa		12.62	□□□□□ -0.39

Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms