RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 MYO7AQ13402 2215 aa23.04■■□□□ 1.28
CAPN1-220ENST00000530567 TADA2AO75478 443 aa23.03■■□□□ 1.28
CAPN1-220ENST00000530567 TNNC2P02585 160 aa23.03■■□□□ 1.28
CAPN1-220ENST00000530567 ITGB3P05106 788 aa23.03■■□□□ 1.28
CAPN1-220ENST00000530567 KRT13P13646 458 aa23.03■■□□□ 1.28
CAPN1-220ENST00000530567 POLR2BP30876 1174 aaKnown RBP23.03■■□□□ 1.28
CAPN1-220ENST00000530567 BRCC3P46736 316 aa23.03■■□□□ 1.28
CAPN1-220ENST00000530567 AARSP49588 968 aaKnown RBP eCLIP23.03■■□□□ 1.28
CAPN1-220ENST00000530567 KRT17Q04695 432 aa23.03■■□□□ 1.28
CAPN1-220ENST00000530567 PPP3CAQ08209 521 aa23.03■■□□□ 1.28
CAPN1-220ENST00000530567 TDRD10Q5VZ19 366 aaKnown RBP23.03■■□□□ 1.28
CAPN1-220ENST00000530567 TAS1R1Q7RTX1 841 aa23.03■■□□□ 1.28
CAPN1-220ENST00000530567 TRAPPC11Q7Z392 1133 aa23.03■■□□□ 1.28
CAPN1-220ENST00000530567 CDX2Q99626 313 aaPredicted RBP23.03■■□□□ 1.28
CAPN1-220ENST00000530567 VWA8A3KMH1 1905 aa23.03■■□□□ 1.28
CAPN1-220ENST00000530567 SF3B1O75533 1304 aaKnown RBP eCLIP23.02■■□□□ 1.281e-7■■■■■ 172.3
CAPN1-220ENST00000530567 IKBKBO14920 756 aa23.02■■□□□ 1.28
CAPN1-220ENST00000530567 SPTLC1O15269 473 aa23.02■■□□□ 1.28
CAPN1-220ENST00000530567 C4BPAP04003 597 aaKnown RBP23.02■■□□□ 1.28
CAPN1-220ENST00000530567 IRS1P35568 1242 aa23.02■■□□□ 1.28
CAPN1-220ENST00000530567 MARSP56192 900 aaKnown RBP23.02■■□□□ 1.28
CAPN1-220ENST00000530567 ERVFC1P60507 584 aa23.02■■□□□ 1.28
CAPN1-220ENST00000530567 ANO6Q4KMQ2 910 aa23.02■■□□□ 1.28
CAPN1-220ENST00000530567 C15orf39Q6ZRI6 1047 aa23.02■■□□□ 1.28
CAPN1-220ENST00000530567 FRMD5Q7Z6J6 570 aa23.02■■□□□ 1.28
CAPN1-220ENST00000530567 ENOX1Q8TC92 643 aaKnown RBP23.02■■□□□ 1.28
CAPN1-220ENST00000530567 HERC2P3Q9BVR0 1158 aa23.02■■□□□ 1.28
CAPN1-220ENST00000530567 LMAN2LQ9H0V9 348 aa23.02■■□□□ 1.28
CAPN1-220ENST00000530567 ZBP1Q9H171 429 aa23.02■■□□□ 1.28
CAPN1-220ENST00000530567 ARMCX3Q9UH62 379 aaPredicted RBP23.02■■□□□ 1.28
CAPN1-220ENST00000530567 PCDHGC5Q9Y5F6 944 aa23.02■■□□□ 1.28
CAPN1-220ENST00000530567 I3L4J1 428 aa23.01■■□□□ 1.27
CAPN1-220ENST00000530567 FSCN2O14926 492 aa23.01■■□□□ 1.27
CAPN1-220ENST00000530567 SOD2P04179 222 aa23.01■■□□□ 1.27
CAPN1-220ENST00000530567 CCDC192P0DO97 292 aa23.01■■□□□ 1.27
CAPN1-220ENST00000530567 ZACNQ401N2 412 aa23.01■■□□□ 1.27
CAPN1-220ENST00000530567 TIGD5Q53EQ6 642 aa23.01■■□□□ 1.27
CAPN1-220ENST00000530567 VPS52Q8N1B4 723 aa23.01■■□□□ 1.27
CAPN1-220ENST00000530567 METTL14Q9HCE5 456 aaKnown RBP23.01■■□□□ 1.27
CAPN1-220ENST00000530567 TLR9Q9NR96 1032 aa23.01■■□□□ 1.27
CAPN1-220ENST00000530567 PUF60Q9UHX1 559 aaKnown RBP23.01■■□□□ 1.27
CAPN1-220ENST00000530567 PRRC2BQ5JSZ5 2229 aaKnown RBP23.01■■□□□ 1.27
CAPN1-220ENST00000530567 CSPG5O95196 566 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 GNA14O95837 355 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 POU3F3P20264 500 aaPredicted RBP23■■□□□ 1.27
CAPN1-220ENST00000530567 AP3M2P53677 418 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 LILRA4P59901 499 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 CCDC40Q4G0X9 1142 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 SV2AQ7L0J3 742 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 USP37Q86T82 979 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 TRIM59Q8IWR1 403 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 LRRC52Q8N7C0 313 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 MYLIPQ8WY64 445 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 SLC35C1Q96A29 364 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 MRPL38Q96DV4 380 aaKnown RBP23■■□□□ 1.27
CAPN1-220ENST00000530567 B3GALT6Q96L58 329 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 CHST7Q9NS84 486 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 AGAP1Q9UPQ3 857 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 NUB1Q9Y5A7 615 aa23■■□□□ 1.27
CAPN1-220ENST00000530567 VNN1O95497 513 aa22.99■■□□□ 1.27
CAPN1-220ENST00000530567 FGFR1OPO95684 399 aaKnown RBP22.99■■□□□ 1.27
CAPN1-220ENST00000530567 CST3P01034 146 aaPredicted RBP22.99■■□□□ 1.27
CAPN1-220ENST00000530567 GCLMP48507 274 aa22.99■■□□□ 1.27
CAPN1-220ENST00000530567 RBP5P82980 135 aa22.99■■□□□ 1.27
CAPN1-220ENST00000530567 SUSD3Q96L08 255 aa22.99■■□□□ 1.27
CAPN1-220ENST00000530567 CNOT6LQ96LI5 555 aaKnown RBP22.99■■□□□ 1.27
CAPN1-220ENST00000530567 TCF25Q9BQ70 676 aa22.99■■□□□ 1.27
CAPN1-220ENST00000530567 THAP9Q9H5L6 903 aa22.99■■□□□ 1.27
CAPN1-220ENST00000530567 NFE2L3Q9Y4A8 694 aa22.99■■□□□ 1.27
CAPN1-220ENST00000530567 MTCH2Q9Y6C9 303 aa22.99■■□□□ 1.27
CAPN1-220ENST00000530567 KRT19P08727 400 aa22.99■■□□□ 1.27
CAPN1-220ENST00000530567 CTSAP10619 480 aa22.99■■□□□ 1.27
CAPN1-220ENST00000530567 ELAVL2Q12926 359 aaKnown RBP22.99■■□□□ 1.27
CAPN1-220ENST00000530567 NCAPHQ15003 741 aa22.99■■□□□ 1.27
CAPN1-220ENST00000530567 DCAF17Q5H9S7 520 aaPredicted RBP22.99■■□□□ 1.27
CAPN1-220ENST00000530567 FAM171A1Q5VUB5 890 aa22.99■■□□□ 1.27
CAPN1-220ENST00000530567 TMEM8AQ9HCN3 771 aa22.99■■□□□ 1.27
CAPN1-220ENST00000530567 SAMSN1Q9NSI8 373 aaKnown RBP22.99■■□□□ 1.27
CAPN1-220ENST00000530567 STK39Q9UEW8 545 aa22.99■■□□□ 1.27
CAPN1-220ENST00000530567 TSC2P49815 1807 aa22.98■■□□□ 1.27
CAPN1-220ENST00000530567 M0QZQ0 153 aa22.98■■□□□ 1.27
CAPN1-220ENST00000530567 FGFR3P22607 806 aa22.98■■□□□ 1.27
CAPN1-220ENST00000530567 GTF2H1P32780 548 aa22.98■■□□□ 1.27
CAPN1-220ENST00000530567 TAF6P49848 677 aa22.98■■□□□ 1.27
CAPN1-220ENST00000530567 PTPROQ16827 1216 aa22.98■■□□□ 1.27
CAPN1-220ENST00000530567 TPD52L1Q16890 204 aaPredicted RBP22.98■■□□□ 1.27
CAPN1-220ENST00000530567 RTP2Q5QGT7 225 aa22.98■■□□□ 1.27
CAPN1-220ENST00000530567 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.98■■□□□ 1.27
CAPN1-220ENST00000530567 AUTS2Q8WXX7 1259 aa22.98■■□□□ 1.27
CAPN1-220ENST00000530567 ZNF560Q96MR9 790 aa22.98■■□□□ 1.27
CAPN1-220ENST00000530567 BPIFA3Q9BQP9 254 aa22.98■■□□□ 1.27
CAPN1-220ENST00000530567 XYLT2Q9H1B5 865 aa22.98■■□□□ 1.27
CAPN1-220ENST00000530567 LMCD1Q9NZU5 365 aa22.98■■□□□ 1.27
CAPN1-220ENST00000530567 TRAPPC3O43617 180 aa22.97■■□□□ 1.27
CAPN1-220ENST00000530567 LILRB3O75022 631 aa22.97■■□□□ 1.27
CAPN1-220ENST00000530567 TKTP29401 623 aaKnown RBP22.97■■□□□ 1.27
CAPN1-220ENST00000530567 PNPLA4P41247 253 aa22.97■■□□□ 1.27
CAPN1-220ENST00000530567 MYL5Q02045 173 aa22.97■■□□□ 1.27
CAPN1-220ENST00000530567 DSG1Q02413 1049 aa22.97■■□□□ 1.27
CAPN1-220ENST00000530567 BIRC3Q13489 604 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms