RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 NSMFQ6X4W1 530 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 HAUS6Q7Z4H7 955 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 SLC13A5Q86YT5 568 aaPredicted RBP15.09■□□□□ 0.01
USP48-213ENST00000529637 EPAS1Q99814 870 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 KIFC3Q9BVG8 833 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 HSPBP1Q9NZL4 362 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 PASKQ96RG2 1323 aa15.08■□□□□ 0.01
USP48-213ENST00000529637 TESPA1A2RU30 521 aaPredicted RBP15.08■□□□□ 0.01
USP48-213ENST00000529637 SORBS3O60504 671 aa15.08■□□□□ 0.01
USP48-213ENST00000529637 KRT17Q04695 432 aa15.08■□□□□ 0.01
USP48-213ENST00000529637 CCDC15Q0P6D6 951 aa15.08■□□□□ 0.01
USP48-213ENST00000529637 ACVR2BQ13705 512 aa15.08■□□□□ 0.01
USP48-213ENST00000529637 TBC1D25Q3MII6 688 aa15.08■□□□□ 0.01
USP48-213ENST00000529637 APBB1IPQ7Z5R6 666 aaPredicted RBP15.08■□□□□ 0.01
USP48-213ENST00000529637 UBL4BQ8N7F7 174 aa15.08■□□□□ 0.01
USP48-213ENST00000529637 ENDOVQ8N8Q3 282 aaKnown RBP15.08■□□□□ 0.01
USP48-213ENST00000529637 NRG4Q8WWG1 115 aa15.08■□□□□ 0.01
USP48-213ENST00000529637 PPP1R12CQ9BZL4 782 aa15.08■□□□□ 0.01
USP48-213ENST00000529637 TMEM206Q9H813 350 aa15.08■□□□□ 0.01
USP48-213ENST00000529637 COL20A1Q9P218 1284 aa15.08■□□□□ 0.01
USP48-213ENST00000529637 PHTF1Q9UMS5 762 aa15.08■□□□□ 0.01
USP48-213ENST00000529637 SIPA1L1O43166 1804 aa15.08■□□□□ 0
USP48-213ENST00000529637 CLDN3O15551 220 aa15.08■□□□□ 0
USP48-213ENST00000529637 CYP26A1O43174 497 aa15.08■□□□□ 0
USP48-213ENST00000529637 HMGB2P26583 209 aaKnown RBP15.08■□□□□ 0
USP48-213ENST00000529637 ALDH3A1P30838 453 aa15.08■□□□□ 0
USP48-213ENST00000529637 QARSP47897 775 aaKnown RBP15.08■□□□□ 0
USP48-213ENST00000529637 GCLCP48506 637 aaPredicted RBP15.08■□□□□ 0
USP48-213ENST00000529637 MTMR1Q13613 665 aa15.08■□□□□ 0
USP48-213ENST00000529637 SEL1L2Q5TEA6 688 aa15.08■□□□□ 0
USP48-213ENST00000529637 RSBN1LQ6PCB5 846 aaPredicted RBP15.08■□□□□ 0
USP48-213ENST00000529637 MTHFD1LQ6UB35 978 aa15.08■□□□□ 0
USP48-213ENST00000529637 KCTD17Q8N5Z5 321 aa15.08■□□□□ 0
USP48-213ENST00000529637 RIT2Q99578 217 aa15.08■□□□□ 0
USP48-213ENST00000529637 TAOK3Q9H2K8 898 aa15.08■□□□□ 0
USP48-213ENST00000529637 PCMTD2Q9NV79 361 aa15.08■□□□□ 0
USP48-213ENST00000529637 KCND2Q9NZV8 630 aa15.08■□□□□ 0
USP48-213ENST00000529637 ASIC3Q9UHC3 531 aa15.08■□□□□ 0
USP48-213ENST00000529637 FEM1BQ9UK73 627 aa15.08■□□□□ 0
USP48-213ENST00000529637 UBE4BO95155 1302 aa15.08■□□□□ 0
USP48-213ENST00000529637 RNF8O76064 485 aa15.07■□□□□ 0
USP48-213ENST00000529637 SGPL1O95470 568 aa15.07■□□□□ 0
USP48-213ENST00000529637 LAMB3Q13751 1172 aa15.07■□□□□ 0
USP48-213ENST00000529637 LBRQ14739 615 aaKnown RBP15.07■□□□□ 0
USP48-213ENST00000529637 SETDB1Q15047 1291 aa15.07■□□□□ 0
USP48-213ENST00000529637 CYFIP1Q7L576 1253 aa15.07■□□□□ 0
USP48-213ENST00000529637 AGGF1Q8N302 714 aaeCLIP15.07■□□□□ 0
USP48-213ENST00000529637 C7orf43Q8WVR3 580 aa15.07■□□□□ 0
USP48-213ENST00000529637 C9orf72Q96LT7 481 aa15.07■□□□□ 0
USP48-213ENST00000529637 ANKRD27Q96NW4 1050 aa15.07■□□□□ 0
USP48-213ENST00000529637 NKIRAS1Q9NYS0 192 aa15.07■□□□□ 0
USP48-213ENST00000529637 THAP12O43422 761 aa15.07■□□□□ 0
USP48-213ENST00000529637 ECEL1O95672 775 aa15.07■□□□□ 0
USP48-213ENST00000529637 ACADSP16219 412 aa15.07■□□□□ 0
USP48-213ENST00000529637 RARRES1P49788 294 aa15.07■□□□□ 0
USP48-213ENST00000529637 SGSM1Q2NKQ1 1148 aa15.07■□□□□ 0
USP48-213ENST00000529637 RHBDF2Q6PJF5 856 aa15.07■□□□□ 0
USP48-213ENST00000529637 DSTYKQ6XUX3 929 aa15.07■□□□□ 0
USP48-213ENST00000529637 RNF207Q6ZRF8 634 aa15.07■□□□□ 0
USP48-213ENST00000529637 ARHGEF18Q6ZSZ5 1173 aa15.07■□□□□ 0
USP48-213ENST00000529637 PHLDB2Q86SQ0 1253 aa15.07■□□□□ 0
USP48-213ENST00000529637 CCNJLQ8IV13 435 aa15.07■□□□□ 0
USP48-213ENST00000529637 RHOT2Q8IXI1 618 aa15.07■□□□□ 0
USP48-213ENST00000529637 ZNF333Q96JL9 665 aa15.07■□□□□ 0
USP48-213ENST00000529637 MIPEPQ99797 713 aa15.07■□□□□ 0
USP48-213ENST00000529637 FAM118BQ9BPY3 351 aa15.07■□□□□ 0
USP48-213ENST00000529637 CHST7Q9NS84 486 aa15.07■□□□□ 0
USP48-213ENST00000529637 NINJ2Q9NZG7 142 aa15.07■□□□□ 0
USP48-213ENST00000529637 QSER1Q2KHR3 1735 aa15.07■□□□□ 0
USP48-213ENST00000529637 SIGLEC16A6NMB1 481 aa15.07■□□□□ 0
USP48-213ENST00000529637 CNGA1P29973 690 aa15.07■□□□□ 0
USP48-213ENST00000529637 YWHABP31946 246 aaKnown RBP15.07■□□□□ 0
USP48-213ENST00000529637 ITGA8P53708 1063 aa15.07■□□□□ 0
USP48-213ENST00000529637 YARSP54577 528 aaKnown RBP15.07■□□□□ 0
USP48-213ENST00000529637 GPC5P78333 572 aa15.07■□□□□ 0
USP48-213ENST00000529637 MOGSQ13724 837 aa15.07■□□□□ 0
USP48-213ENST00000529637 CYP1B1Q16678 543 aa15.07■□□□□ 0
USP48-213ENST00000529637 IFT43Q96FT9 208 aa15.07■□□□□ 0
USP48-213ENST00000529637 FGFR1P11362 822 aa15.06■□□□□ 0
USP48-213ENST00000529637 KRT5P13647 590 aa15.06■□□□□ 0
USP48-213ENST00000529637 IVDP26440 423 aa15.06■□□□□ 0
USP48-213ENST00000529637 CAP2P40123 477 aa15.06■□□□□ 0
USP48-213ENST00000529637 MKRN3Q13064 507 aaKnown RBP15.06■□□□□ 0
USP48-213ENST00000529637 RCN2Q14257 317 aa15.06■□□□□ 0
USP48-213ENST00000529637 TAF1BQ53T94 588 aaPredicted RBP15.06■□□□□ 0
USP48-213ENST00000529637 CBWD2Q8IUF1 395 aa15.06■□□□□ 0
USP48-213ENST00000529637 RBBP8NLQ8NC74 664 aaPredicted RBP15.06■□□□□ 0
USP48-213ENST00000529637 HERPUD2Q9BSE4 406 aa15.06■□□□□ 0
USP48-213ENST00000529637 SLX4Q8IY92 1834 aa15.06■□□□□ 0
USP48-213ENST00000529637 RASA4BC9J798 803 aa15.06■□□□□ 0
USP48-213ENST00000529637 E7ENQ6 273 aa15.06■□□□□ 0
USP48-213ENST00000529637 NVLO15381 856 aaKnown RBP15.06■□□□□ 0
USP48-213ENST00000529637 RASA4O43374 803 aa15.06■□□□□ 0
USP48-213ENST00000529637 PLS3P13797 630 aa15.06■□□□□ 0
USP48-213ENST00000529637 STRN3Q13033 797 aa15.06■□□□□ 0
USP48-213ENST00000529637 TMED2Q15363 201 aa15.06■□□□□ 0
USP48-213ENST00000529637 TKFCQ3LXA3 575 aa15.06■□□□□ 0
USP48-213ENST00000529637 KIFAP3Q92845 792 aa15.06■□□□□ 0
USP48-213ENST00000529637 MIF4GDA9UHW6 222 aaKnown RBP15.05■□□□□ 0
USP48-213ENST00000529637 KIF22Q14807 665 aa15.05■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms