RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 C3orf58Q8NDZ4 430 aa22.41■■□□□ 1.18
CD44-222ENST00000526025 OR5B17Q8NGF7 314 aa22.41■■□□□ 1.18
CD44-222ENST00000526025 ENOX1Q8TC92 643 aaKnown RBP22.41■■□□□ 1.18
CD44-222ENST00000526025 EEF2KMTQ96G04 330 aa22.41■■□□□ 1.18
CD44-222ENST00000526025 ZNF560Q96MR9 790 aa22.41■■□□□ 1.18
CD44-222ENST00000526025 GAS2L1Q99501 681 aaPredicted RBP22.41■■□□□ 1.18
CD44-222ENST00000526025 FUCA2Q9BTY2 467 aa22.41■■□□□ 1.18
CD44-222ENST00000526025 VN1R3Q9BXE9 311 aa22.41■■□□□ 1.18
CD44-222ENST00000526025 SRRTQ9BXP5 876 aaKnown RBP22.41■■□□□ 1.18
CD44-222ENST00000526025 TLR9Q9NR96 1032 aa22.41■■□□□ 1.18
CD44-222ENST00000526025 ARMCX3Q9UH62 379 aaPredicted RBP22.41■■□□□ 1.18
CD44-222ENST00000526025 MYO7AQ13402 2215 aa22.41■■□□□ 1.18
CD44-222ENST00000526025 F8W810 466 aa22.4■■□□□ 1.18
CD44-222ENST00000526025 FSCN2O14926 492 aa22.4■■□□□ 1.18
CD44-222ENST00000526025 DNAJB1P25685 340 aa22.4■■□□□ 1.18
CD44-222ENST00000526025 RBP5P82980 135 aa22.4■■□□□ 1.18
CD44-222ENST00000526025 CAMK1Q14012 370 aa22.4■■□□□ 1.18
CD44-222ENST00000526025 C1orf220Q5T0J3 134 aa22.4■■□□□ 1.18
CD44-222ENST00000526025 TRAPPC11Q7Z392 1133 aa22.4■■□□□ 1.18
CD44-222ENST00000526025 GUCD1Q96NT3 240 aa22.4■■□□□ 1.18
CD44-222ENST00000526025 POP1Q99575 1024 aaKnown RBP22.4■■□□□ 1.18
CD44-222ENST00000526025 NAT10Q9H0A0 1025 aaKnown RBP22.4■■□□□ 1.18
CD44-222ENST00000526025 ZBP1Q9H171 429 aa22.4■■□□□ 1.18
CD44-222ENST00000526025 THAP9Q9H5L6 903 aa22.4■■□□□ 1.18
CD44-222ENST00000526025 NGRNQ9NPE2 291 aaKnown RBP22.4■■□□□ 1.18
CD44-222ENST00000526025 SIX4Q9UIU6 781 aa22.4■■□□□ 1.18
CD44-222ENST00000526025 IRAK3Q9Y616 596 aa22.4■■□□□ 1.18
CD44-222ENST00000526025 PRRC2BQ5JSZ5 2229 aaKnown RBP22.4■■□□□ 1.18
CD44-222ENST00000526025 ARHGEF37A1IGU5 675 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 RFXAPO00287 272 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 ITGB3P05106 788 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 CTSAP10619 480 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 LILRA4P59901 499 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 DLG4P78352 724 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 ZSCAN23Q3MJ62 389 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 ZACNQ401N2 412 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 LMBRD2Q68DH5 695 aaPredicted RBP22.39■■□□□ 1.17
CD44-222ENST00000526025 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.39■■□□□ 1.17
CD44-222ENST00000526025 C15orf39Q6ZRI6 1047 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 ZNF516Q92618 1163 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 RABGGTAQ92696 567 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 SUSD3Q96L08 255 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 FAM161BQ96MY7 647 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 CDX2Q99626 313 aaPredicted RBP22.39■■□□□ 1.17
CD44-222ENST00000526025 BPIFA3Q9BQP9 254 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 GPR62Q9BZJ7 368 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 CHST7Q9NS84 486 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 SSX2IPQ9Y2D8 614 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 NUB1Q9Y5A7 615 aa22.39■■□□□ 1.17
CD44-222ENST00000526025 TSC2P49815 1807 aa22.38■■□□□ 1.17
CD44-222ENST00000526025 SYCE3A1L190 88 aa22.38■■□□□ 1.17
CD44-222ENST00000526025 M0QZQ0 153 aa22.38■■□□□ 1.17
CD44-222ENST00000526025 SYN3O14994 580 aa22.38■■□□□ 1.17
CD44-222ENST00000526025 STAU1O95793 577 aaKnown RBP22.38■■□□□ 1.17
CD44-222ENST00000526025 C4BPAP04003 597 aaKnown RBP22.38■■□□□ 1.17
CD44-222ENST00000526025 POLR2BP30876 1174 aaKnown RBP22.38■■□□□ 1.17
CD44-222ENST00000526025 TAF6P49848 677 aa22.38■■□□□ 1.17
CD44-222ENST00000526025 TPD52L1Q16890 204 aaPredicted RBP22.38■■□□□ 1.17
CD44-222ENST00000526025 USP41Q3LFD5 358 aa22.38■■□□□ 1.17
CD44-222ENST00000526025 CCDC40Q4G0X9 1142 aa22.38■■□□□ 1.17
CD44-222ENST00000526025 TIGD5Q53EQ6 642 aa22.38■■□□□ 1.17
CD44-222ENST00000526025 FAM114A1Q8IWE2 563 aa22.38■■□□□ 1.17
CD44-222ENST00000526025 VPS52Q8N1B4 723 aa22.38■■□□□ 1.17
CD44-222ENST00000526025 R3HCC1Q9Y3T6 440 aaKnown RBP22.38■■□□□ 1.17
CD44-222ENST00000526025 PPEF2O14830 753 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 CAVIN2O95810 425 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 FGFR3P22607 806 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 ATICP31939 592 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 DSG1Q02413 1049 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 ADGRE1Q14246 886 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 SMC1AQ14683 1233 aaKnown RBP22.37■■□□□ 1.17
CD44-222ENST00000526025 SV2CQ496J9 727 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 PDXDC1Q6P996 788 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 C11orf57Q6ZUT1 292 aaPredicted RBP22.37■■□□□ 1.17
CD44-222ENST00000526025 HASPINQ8TF76 798 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 SLC35C1Q96A29 364 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 TCF25Q9BQ70 676 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 DNAJC25Q9H1X3 360 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 TMEM8AQ9HCN3 771 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 AGAP1Q9UPQ3 857 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 MTCH2Q9Y6C9 303 aa22.37■■□□□ 1.17
CD44-222ENST00000526025 PMM2O15305 246 aa22.36■■□□□ 1.17
CD44-222ENST00000526025 URODP06132 367 aa22.36■■□□□ 1.17
CD44-222ENST00000526025 TRIM49P0CI25 452 aa22.36■■□□□ 1.17
CD44-222ENST00000526025 TRIM49CP0CI26 452 aa22.36■■□□□ 1.17
CD44-222ENST00000526025 GLUD2P49448 558 aa22.36■■□□□ 1.17
CD44-222ENST00000526025 ERVFC1P60507 584 aa22.36■■□□□ 1.17
CD44-222ENST00000526025 MYO1EQ12965 1108 aa22.36■■□□□ 1.17
CD44-222ENST00000526025 FAM171A1Q5VUB5 890 aa22.36■■□□□ 1.17
CD44-222ENST00000526025 TDRD10Q5VZ19 366 aaKnown RBP22.36■■□□□ 1.17
CD44-222ENST00000526025 SV2AQ7L0J3 742 aa22.36■■□□□ 1.17
CD44-222ENST00000526025 TRIM59Q8IWR1 403 aa22.36■■□□□ 1.17
CD44-222ENST00000526025 TTPALQ9BTX7 342 aa22.36■■□□□ 1.17
CD44-222ENST00000526025 VRTNQ9H8Y1 702 aa22.36■■□□□ 1.17
CD44-222ENST00000526025 ENTPD7Q9NQZ7 604 aa22.36■■□□□ 1.17
CD44-222ENST00000526025 PCDHB8Q9UN66 801 aa22.36■■□□□ 1.17
CD44-222ENST00000526025 LILRB3O75022 631 aa22.35■■□□□ 1.17
CD44-222ENST00000526025 KRT19P08727 400 aa22.35■■□□□ 1.17
CD44-222ENST00000526025 TYMPP19971 482 aa22.35■■□□□ 1.17
CD44-222ENST00000526025 IGFBP6P24592 240 aaPredicted RBP22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms