RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 WDR49Q8IV35 697 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 SLC39A11Q8N1S5 342 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 DEFB123Q8N688 67 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 NAP1L5Q96NT1 182 aaPredicted RBP16.55■□□□□ 0.24
LSM1-203ENST00000520755 MTMR12Q9C0I1 747 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 VPS16Q9H269 839 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 ALG13Q9NP73 1137 aaKnown RBP16.55■□□□□ 0.24
LSM1-203ENST00000520755 UBQLN1Q9UMX0 589 aaKnown RBP16.55■□□□□ 0.24
LSM1-203ENST00000520755 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.55■□□□□ 0.24
LSM1-203ENST00000520755 SZT2Q5T011 3432 aa16.55■□□□□ 0.24
LSM1-203ENST00000520755 A0A1B0GTH6 734 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 F8W810 466 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 H3BNC9 293 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 XPOTO43592 962 aaKnown RBP16.54■□□□□ 0.24
LSM1-203ENST00000520755 CSPG5O95196 566 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 ITGB1P05556 798 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 PRKCSHP14314 528 aaPredicted RBP16.54■□□□□ 0.24
LSM1-203ENST00000520755 CDK11BP21127 795 aaKnown RBP16.54■□□□□ 0.24
LSM1-203ENST00000520755 PPM1AP35813 382 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 GCLMP48507 274 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 CLCNKBP51801 687 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 TFAMQ00059 246 aaKnown RBP16.54■□□□□ 0.24
LSM1-203ENST00000520755 KCNH2Q12809 1159 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 SURF1Q15526 300 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 VWA3BQ502W6 1294 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 TDRD10Q5VZ19 366 aaKnown RBP16.54■□□□□ 0.24
LSM1-203ENST00000520755 SARM1Q6SZW1 724 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 BEST2Q8NFU1 509 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 CXorf38Q8TB03 319 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 HASPINQ8TF76 798 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 BCL7CQ8WUZ0 217 aaPredicted RBP16.54■□□□□ 0.24
LSM1-203ENST00000520755 TMEM169Q96HH4 297 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 FNBP1Q96RU3 617 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 TSPAN18Q96SJ8 248 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 COLEC11Q9BWP8 271 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 MMRN2Q9H8L6 949 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 MARCH5Q9NX47 278 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 DERAQ9Y315 318 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 C2CD2Q9Y426 696 aa16.54■□□□□ 0.24
LSM1-203ENST00000520755 CARNS1A5YM72 827 aa16.53■□□□□ 0.24
LSM1-203ENST00000520755 LGALS16A8MUM7 142 aa16.53■□□□□ 0.24
LSM1-203ENST00000520755 AFPP02771 609 aaKnown RBP16.53■□□□□ 0.24
LSM1-203ENST00000520755 C4BPAP04003 597 aaKnown RBP16.53■□□□□ 0.24
LSM1-203ENST00000520755 FMO5P49326 533 aa16.53■□□□□ 0.24
LSM1-203ENST00000520755 UVSSAQ2YD98 709 aa16.53■□□□□ 0.24
LSM1-203ENST00000520755 ZACNQ401N2 412 aa16.53■□□□□ 0.24
LSM1-203ENST00000520755 IGSF21Q96ID5 467 aa16.53■□□□□ 0.24
LSM1-203ENST00000520755 UROC1Q96N76 676 aa16.53■□□□□ 0.24
LSM1-203ENST00000520755 NDST4Q9H3R1 872 aa16.53■□□□□ 0.24
LSM1-203ENST00000520755 GRPEL1Q9HAV7 217 aa16.53■□□□□ 0.24
LSM1-203ENST00000520755 IFNKQ9P0W0 207 aa16.53■□□□□ 0.24
LSM1-203ENST00000520755 GOLGA6L3A6NEY3 463 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 PODXLO00592 558 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 GRM6O15303 877 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 TEX33O43247 280 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 LRRN2O75325 713 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 TADA2AO75478 443 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 KIF4AO95239 1232 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 VNN1O95497 513 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 TMEM191BP0C7N4 346 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 TNNI1P19237 187 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 CYP3A5P20815 502 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 MXI1P50539 228 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 MYL7Q01449 175 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 KRT17Q04695 432 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 GSE1Q14687 1217 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 PTPN21Q16825 1174 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 UPP1Q16831 310 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 SV2AQ7L0J3 742 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 NT5DC4Q86YG4 428 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 C1orf127Q8N9H9 656 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 CACTINQ8WUQ7 758 aaKnown RBP16.52■□□□□ 0.24
LSM1-203ENST00000520755 DDX27Q96GQ7 796 aaKnown RBP16.52■□□□□ 0.24
LSM1-203ENST00000520755 XPO4Q9C0E2 1151 aaKnown RBP16.52■□□□□ 0.24
LSM1-203ENST00000520755 TMEM8AQ9HCN3 771 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 RTN4Q9NQC3 1192 aaKnown RBP16.52■□□□□ 0.24
LSM1-203ENST00000520755 DPP3Q9NY33 737 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 SIX4Q9UIU6 781 aa16.52■□□□□ 0.24
LSM1-203ENST00000520755 PPEF2O14830 753 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 B3GAT3O94766 335 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 SERPINC1P01008 464 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 IGFBP6P24592 240 aaPredicted RBP16.51■□□□□ 0.23
LSM1-203ENST00000520755 LRPAP1P30533 357 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 GTF2H1P32780 548 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 RPL9P32969 192 aaKnown RBP16.51■□□□□ 0.23
LSM1-203ENST00000520755 PLCB3Q01970 1234 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 DCLRE1AQ6PJP8 1040 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 TRAPPC11Q7Z392 1133 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 USP37Q86T82 979 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 C3orf58Q8NDZ4 430 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 ANKRD20A12PQ8NF67 263 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 SPPL3Q8TCT6 385 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 TAS1R2Q8TE23 839 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 POF1BQ8WVV4 589 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 ANKRD36BP1Q96IX9 119 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 ADAM28Q9UKQ2 775 aa16.51■□□□□ 0.23
LSM1-203ENST00000520755 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.51■□□□□ 0.23
LSM1-203ENST00000520755 PMM2O15305 246 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 LPXNO60711 386 aa16.5■□□□□ 0.23
LSM1-203ENST00000520755 TNNC2P02585 160 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms