RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 CD244Q9BZW8 370 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 DBF4Q9UBU7 674 aaPredicted RBP6.32□□□□□ -1.4
NUP54-218ENST00000515460 SRPK3Q9UPE1 567 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 SCAF8Q9UPN6 1271 aaKnown RBP6.32□□□□□ -1.4
NUP54-218ENST00000515460 TELO2Q9Y4R8 837 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 ZFYVE26Q68DK2 2539 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 ZNF839A8K0R7 811 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 MUSKO15146 869 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 FZD7O75084 574 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 IPO7O95373 1038 aaKnown RBP6.31□□□□□ -1.4
NUP54-218ENST00000515460 CNOT4O95628 575 aaKnown RBP6.31□□□□□ -1.4
NUP54-218ENST00000515460 SLPIP03973 132 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 HOXB7P09629 217 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 CAPN2P17655 700 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 RPS12P25398 132 aaKnown RBP6.31□□□□□ -1.4
NUP54-218ENST00000515460 SELENOPP49908 381 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 LRCH2Q5VUJ6 765 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 ZSWIM2Q8NEG5 633 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 MYRIPQ8NFW9 859 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 PCDH19Q8TAB3 1148 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 RUNDC1Q96C34 613 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 LMF1Q96S06 567 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 TACO1Q9BSH4 297 aaKnown RBP6.31□□□□□ -1.4
NUP54-218ENST00000515460 MRIQ9BWK5 157 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 ARHGAP39Q9C0H5 1083 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 UPF2Q9HAU5 1272 aaKnown RBP6.31□□□□□ -1.4
NUP54-218ENST00000515460 RIC8BQ9NVN3 520 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 OGFRQ9NZT2 677 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 NDOR1Q9UHB4 597 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 ATP23Q9Y6H3 246 aa6.31□□□□□ -1.4
NUP54-218ENST00000515460 FAM221BA6H8Z2 402 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 COQ9O75208 318 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 CRTAMO95727 393 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 SRGAP2CP0DJJ0 459 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 PYGMP11217 842 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 PDE6AP16499 860 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 PTPN1P18031 435 aaKnown RBP6.3□□□□□ -1.4
NUP54-218ENST00000515460 KRT15P19012 456 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 DDX10Q13206 875 aaKnown RBP6.3□□□□□ -1.4
NUP54-218ENST00000515460 ST3GAL2Q16842 350 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 GIMAP8Q8ND71 665 aaPredicted RBP6.3□□□□□ -1.4
NUP54-218ENST00000515460 SH3RF2Q8TEC5 729 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 THAP3Q8WTV1 239 aaPredicted RBP6.3□□□□□ -1.4
NUP54-218ENST00000515460 ERCC4Q92889 916 aaPredicted RBP6.3□□□□□ -1.4
NUP54-218ENST00000515460 DCPSQ96C86 337 aaKnown RBP6.3□□□□□ -1.4
NUP54-218ENST00000515460 EYA3Q99504 573 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 DNAJC7Q99615 494 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 HYPKQ9NX55 129 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 ARHGAP28Q9P2N2 729 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 PCDHA9Q9Y5H5 950 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 HS3ST3A1Q9Y663 406 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 ASPMQ8IZT6 3477 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 MYO9BQ13459 2157 aa6.3□□□□□ -1.4
NUP54-218ENST00000515460 TCRBV5S4A2TA0A5A2 114 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 PI4K2BG5E9Z4 385 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 H0Y858 1186 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 ACOT7O00154 380 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 ELL2O00472 640 aaPredicted RBP6.29□□□□□ -1.4
NUP54-218ENST00000515460 IPO8O15397 1037 aaKnown RBP6.29□□□□□ -1.4
NUP54-218ENST00000515460 FOXS1O43638 330 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 IL18BPO95998 194 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 CSF2RBP32927 897 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 ACVRL1P37023 503 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 ZNF280AP59817 542 aaPredicted RBP6.29□□□□□ -1.4
NUP54-218ENST00000515460 CBX1P83916 185 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 DBPQ10586 325 aaPredicted RBP6.29□□□□□ -1.4
NUP54-218ENST00000515460 CDC37Q16543 378 aaPredicted RBP6.29□□□□□ -1.4
NUP54-218ENST00000515460 TCTN3Q6NUS6 607 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 USP51Q70EK9 711 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 REXO1L1PQ8IX06 675 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 C8orf58Q8NAV2 365 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 TBC1D22AQ8WUA7 517 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 SNRNP27Q8WVK2 155 aaKnown RBP6.29□□□□□ -1.4
NUP54-218ENST00000515460 CHMP4CQ96CF2 233 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 AJUBAQ96IF1 538 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 MYD88Q99836 296 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 SLC39A2Q9NP94 309 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 DUOX1Q9NRD9 1551 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 KCND1Q9NSA2 647 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 SFMBT1Q9UHJ3 866 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 ZNF646O15015 1829 aaPredicted RBP6.29□□□□□ -1.4
NUP54-218ENST00000515460 COL4A1P02462 1669 aa6.29□□□□□ -1.4
NUP54-218ENST00000515460 NUP98P52948 1817 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 DHX16O60231 1041 aaKnown RBP6.28□□□□□ -1.4
NUP54-218ENST00000515460 PDE8AO60658 829 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 EIF3JO75822 258 aaKnown RBP6.28□□□□□ -1.4
NUP54-218ENST00000515460 UFL1O94874 794 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 ZRANB2O95218 330 aaKnown RBP eCLIP6.28□□□□□ -1.4
NUP54-218ENST00000515460 TFRCP02786 760 aaKnown RBP6.28□□□□□ -1.4
NUP54-218ENST00000515460 PCCAP05165 728 aaPredicted RBP6.28□□□□□ -1.4
NUP54-218ENST00000515460 ZNF888P0CJ79 500 aaPredicted RBP6.28□□□□□ -1.4
NUP54-218ENST00000515460 SETSIPP0DME0 302 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 DNM2P50570 870 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 SARNPP82979 210 aaKnown RBP6.28□□□□□ -1.4
NUP54-218ENST00000515460 TAX1BP1Q86VP1 789 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 OSTM1Q86WC4 334 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 PTRH1Q86Y79 214 aaKnown RBP6.28□□□□□ -1.4
NUP54-218ENST00000515460 CCDC191Q8NCU4 936 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 AGBL3Q8NEM8 1001 aa6.28□□□□□ -1.4
NUP54-218ENST00000515460 SREK1Q8WXA9 508 aaKnown RBP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms