RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 PDIA5Q14554 519 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 SLC27A1Q6PCB7 646 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 DSTYKQ6XUX3 929 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 CCDC26Q8TAB7 109 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 KIFAP3Q92845 792 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 ACAP3Q96P50 834 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 MRPL4Q9BYD3 311 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 PHACTR1Q9C0D0 580 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 ZCWPW1Q9H0M4 648 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 PDE11AQ9HCR9 933 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 ARGLU1Q9NWB6 273 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 TMEM161AQ9NX61 479 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 DOCK6Q96HP0 2047 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 THP07101 528 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 CPB1P15086 417 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 ATF7P17544 494 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 RFX1P22670 979 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 CLCNKBP51801 687 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 ADCY2Q08462 1091 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 GIT2Q14161 759 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 CBX2Q14781 532 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 C1orf186Q6ZWK4 172 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 KCNG4Q8TDN1 519 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 WHAMMQ8TF30 809 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 ING5Q8WYH8 240 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 C11orf84Q9BUA3 381 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 GOLPH3LQ9H4A5 285 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 AGPAT5Q9NUQ2 364 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 MAGED2Q9UNF1 606 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 EXOC3O60645 756 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 BAIAP3O94812 1187 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 IL9P15248 144 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 GJA1P17302 382 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 ACAT1P24752 427 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 RFC2P35250 354 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 TAF12Q16514 161 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 ZNF394Q53GI3 561 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 DCAF17Q5H9S7 520 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 B3GNT9Q6UX72 402 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 USP37Q86T82 979 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 CCDC65Q8IXS2 484 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 TTC8Q8TAM2 541 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 NEK9Q8TD19 979 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 APBB2Q92870 758 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 PGBD4Q96DM1 585 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 SPDL1Q96EA4 605 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 ARPC5LQ9BPX5 153 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 CDT1Q9H211 546 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 PRMT7Q9NVM4 692 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 TUBGCP4Q9UGJ1 667 aa8.5□□□□□ -1.05
LIMCH1-219ENST00000514096 PPEF2O14830 753 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 COQ9O75208 318 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 SNUPNO95149 360 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 CXCL10P02778 98 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 PLS3P13797 630 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 EPCAMP16422 314 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 PTPN21Q16825 1174 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 FAM26FQ5R3K3 315 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 NT5DC1Q5TFE4 455 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 SDHAF4Q5VUM1 108 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 FBXW10Q5XX13 1052 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 SCARA3Q6AZY7 606 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 SYT2Q8N9I0 419 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 SMG8Q8ND04 991 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 GPR62Q9BZJ7 368 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 PRO3102Q9H379 93 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 PDZD7Q9H5P4 517 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 RPF1Q9H9Y2 349 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 AAASQ9NRG9 546 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 TOPORSQ9NS56 1045 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 SPG21Q9NZD8 308 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 RAPGEFL1Q9UHV5 662 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 LOXHD1Q8IVV2 1947 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 TTC3P53804 2025 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 ZNF202O95125 648 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 BMP15O95972 392 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 PDGFRBP09619 1106 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 ARL2P36404 184 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 ZNF410Q86VK4 478 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 LRRC43Q8N309 656 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 FAM200AQ8TCP9 573 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 YIPF3Q9GZM5 350 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 RGS18Q9NS28 235 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 MTCH2Q9Y6C9 303 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 ADCY5O95622 1261 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 URODP06132 367 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 OR1D2P34982 312 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 NAMPTP43490 491 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 SLC12A3P55017 1021 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 PTPROQ16827 1216 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 CCDC142Q17RM4 750 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 ARL6IP4Q66PJ3 421 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 SRGAP1Q7Z6B7 1085 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 SLC22A17Q8WUG5 538 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 BCL7CQ8WUZ0 217 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 MRPS27Q92552 414 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 HLA-CQ95604 372 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 NACA2Q9H009 215 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 TMEM117Q9H0C3 514 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 TLR9Q9NR96 1032 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms