RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 NRCAMQ92823 1304 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 A0A087WUV0 522 aaPredicted RBP17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 FAM187AA6NFU0 413 aa17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 SLC16A4O15374 487 aa17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 ITGA4P13612 1032 aa17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 GLRA2P23416 452 aa17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 CTCFP49711 727 aaPredicted RBP17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 MKRN4PQ13434 485 aaPredicted RBP17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 UAP1Q16222 522 aaPredicted RBP17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 EPC2Q52LR7 807 aa17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 AGBL2Q5U5Z8 902 aa17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 KCTD16Q68DU8 428 aa17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 PHLDB3Q6NSJ2 640 aa17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 MTHFD1LQ6UB35 978 aa17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 ASAP3Q8TDY4 903 aa17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 SPIRE2Q8WWL2 714 aa17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 PSPC1Q8WXF1 523 aaKnown RBP17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 RNPC3Q96LT9 517 aaKnown RBP17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 UNC93B1Q9H1C4 597 aa17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 EPN3Q9H201 632 aa17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 AMACRQ9UHK6 382 aa17.19■□□□□ 0.34
SQSTM1-213ENST00000510187 FGGP02679 453 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 LSP1P33241 339 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 CLCN3P51790 818 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 VAMP7P51809 220 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 NCKAP1LP55160 1127 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 DHX34Q14147 1143 aaKnown RBP17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 MARCH8Q5T0T0 291 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 CCSAPQ6IQ19 270 aaPredicted RBP17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 C7orf31Q8N865 590 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 PRPF31Q8WWY3 499 aaKnown RBP17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 NTPCRQ9BSD7 190 aaKnown RBP17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 KIFC3Q9BVG8 833 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 KCNG1Q9UIX4 513 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 NDUFAB1O14561 156 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 MTA2O94776 668 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 CTNNA1P35221 906 aaKnown RBP17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 MDH1P40925 334 aaKnown RBP17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 MXD4Q14582 209 aaPredicted RBP17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 HAUS6Q7Z4H7 955 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 TMC3Q7Z5M5 1100 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 XXYLT1Q8NBI6 393 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 ARHGEF26Q96DR7 871 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 THAP2Q9H0W7 228 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 NEUROG2Q9H2A3 272 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 TMEM51Q9NW97 253 aa17.18■□□□□ 0.34
SQSTM1-213ENST00000510187 BRCA2P51587 3418 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 LRRIQ4A6NIV6 560 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 FOXN3O00409 490 aaPredicted RBP17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 TTI1O43156 1089 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 DAPK3O43293 454 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 ABCB4P21439 1286 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 TMOD1P28289 359 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 GBP1P32455 592 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 NAMPTP43490 491 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 EIF3BP55884 814 aaKnown RBP17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 GTF2BQ00403 316 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 ZNF844Q08AG5 666 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 MTFR1Q15390 333 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 PTGISQ16647 500 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 ARHGAP44Q17R89 818 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 DCAF12L1Q5VU92 463 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 RHPN2Q8IUC4 686 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 C3orf20Q8ND61 904 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 TMEM161BQ8NDZ6 487 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 HVCN1Q96D96 273 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 RPS6KC1Q96S38 1066 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 GGA2Q9UJY4 613 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 FAM169AQ9Y6X4 670 aa17.17■□□□□ 0.34
SQSTM1-213ENST00000510187 C17orf102A2RUQ5 167 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 TULP1O00294 542 aaPredicted RBP17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 PPFIA2O75334 1257 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 ERLIN2O94905 339 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 ATP1A2P50993 1020 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 DRG2P55039 364 aaKnown RBP17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 LAMTOR4Q0VGL1 99 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 CAPSQ13938 189 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 PTPROQ16827 1216 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 NBPF20Q3BBV1 942 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 FBXO46Q6PJ61 603 aaPredicted RBP17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 MICALCLQ6ZW33 695 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 TADA2BQ86TJ2 420 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 DDX42Q86XP3 938 aaKnown RBP eCLIP17.16■□□□□ 0.342e-11■□□□□ 10.2
SQSTM1-213ENST00000510187 UBL4BQ8N7F7 174 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 ARRDC4Q8NCT1 418 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 DEPTORQ8TB45 409 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 RNF208Q9H0X6 261 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 UBE2TQ9NPD8 197 aaPredicted RBP17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 PAK6Q9NQU5 681 aaPredicted RBP17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 RASAL2Q9UJF2 1139 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 ADGRA3Q8IWK6 1321 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 DENND3A2RUS2 1198 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 H0YCG3 227 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 RTN2O75298 545 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 GJB1P08034 283 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 SRGAP2CP0DJJ0 459 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 GNAT1P11488 350 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 GZMAP12544 262 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 CCL5P13501 91 aa17.16■□□□□ 0.34
SQSTM1-213ENST00000510187 ACLYP53396 1101 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms