RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 SH2B2O14492 632 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 ZBTB22O15209 634 aa11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 MTSS1O43312 755 aa11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 FSBPO95073 299 aa11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 FTLP02792 175 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 HIST1H2AGP0C0S8 130 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 HIST1H2ADP20671 130 aa11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 GFPT1Q06210 699 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 LGALS3BPQ08380 585 aa11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 TMPRSS6Q8IU80 811 aa11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 HIST1H2AHQ96KK5 128 aa11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 HIST1H2AJQ99878 128 aa11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 H2AFJQ9BTM1 129 aa11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 HEMGNQ9BXL5 484 aa11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 USP44Q9H0E7 712 aa11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 CCDC59Q9P031 241 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 VPS9D1Q9Y2B5 631 aa11.75□□□□□ -0.53
LIMCH1-208ENST00000508501 USP19O94966 1318 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 NR3C1P04150 777 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 ZCCHC18P0CG32 403 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 CCDC144BQ3MJ40 725 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 TUBA3EQ6PEY2 450 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 NUP93Q8N1F7 819 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 FAM89AQ96GI7 184 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 ECSITQ9BQ95 431 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 TRIM51Q9BSJ1 452 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 ZC3H7BQ9UGR2 993 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 TTC7AQ9ULT0 858 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 TRPM2O94759 1503 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 YTHDC2Q9H6S0 1430 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 C1orf232A0A0U1RR37 186 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 CRKP46108 304 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 ARID5BQ14865 1188 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 KYAT1Q16773 422 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 PREPLQ4J6C6 727 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 IP6K1Q92551 441 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 RORBQ92753 470 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 GPKOWQ92917 476 aaPredicted RBP eCLIP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 EAF2Q96CJ1 260 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 ARHGEF26Q96DR7 871 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 CEP170P1Q96L14 293 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 WDR24Q96S15 920 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 PACSIN1Q9BY11 444 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 PABPC3Q9H361 631 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 VTA1Q9NP79 307 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 AVENQ9NQS1 362 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 METTL5Q9NRN9 209 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 NXF1Q9UBU9 619 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 ING4Q9UNL4 249 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 ADGRL1O94910 1474 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 MAGI1Q96QZ7 1491 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 PER1O15534 1290 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 FGFR4P22455 802 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 CNTFP26441 200 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 OLR1P78380 273 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 RAD51Q06609 339 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 TRAF3Q13114 568 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 ATP1A4Q13733 1029 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 SPOUT1Q5T280 376 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 KLHL17Q6TDP4 642 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 DLG3Q92796 817 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 ALDH8A1Q9H2A2 487 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 ATXN10Q9UBB4 475 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 SEPT9Q9UHD8 586 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 TMCC3Q9ULS5 477 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 NEU2Q9Y3R4 380 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 PIPSLA2A3N6 862 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 APOL1O14791 398 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 CYP21A2P08686 494 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 H2AFXP16104 143 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 LRPAP1P30533 357 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 STXBP2Q15833 593 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 MFSD4BQ5TF39 518 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 SPATA17Q96L03 361 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 RGS18Q9NS28 235 aa11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 R3HDM2Q9Y2K5 976 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-208ENST00000508501 INO80B-WBP1J3KQ70 363 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 GLRA3O75311 464 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 PTK7Q13308 1070 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 CCDC153Q494R4 210 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 EYA1Q99502 592 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 INO80BQ9C086 356 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 A0A1B0GTH6 734 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 A0A1W2PQJ5 194 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 A0A1W2PRG6 482 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 SPDYE5A6NIY4 337 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 C3orf70A6NLC5 250 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 PSAPP07602 524 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 ALAS1P13196 640 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 ITGAXP20702 1163 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 OTUD4Q01804 1114 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 XRCC4Q13426 336 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 POLA2Q14181 598 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 SPDYE7PQ495Y7 208 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 E4F1Q66K89 784 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 PPP1R18Q6NYC8 613 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 CLEC4GQ6UXB4 293 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 TAS2R42Q7RTR8 314 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 KRT77Q7Z794 578 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 CYP4Z2PQ8N1L4 340 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms