RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 MTO1Q9Y2Z2 717 aaKnown RBP16.85■□□□□ 0.29
SCLT1-208ENST00000506368 TCRBV7S2A1N4TA0A589 114 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 FOXN3O00409 490 aaPredicted RBP16.84■□□□□ 0.29
SCLT1-208ENST00000506368 CLIC2O15247 247 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 MAGEC1O60732 1142 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 UPP2O95045 317 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 TGDSO95455 350 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 CETPP11597 493 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 RANBP1P43487 201 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 CDK7P50613 346 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 RAP1GDS1P52306 607 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 RPS8P62241 208 aaKnown RBP16.84■□□□□ 0.29
SCLT1-208ENST00000506368 PTP4A2Q12974 167 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 C6orf163Q5TEZ5 329 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 ZNF365Q70YC5 407 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 ZNF804AQ7Z570 1209 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 PALB2Q86YC2 1186 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 VPS52Q8N1B4 723 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 PIP4K2CQ8TBX8 421 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 TGFBRAP1Q8WUH2 860 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 TMEM174Q8WUU8 243 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 ALKBH8Q96BT7 664 aaKnown RBP16.84■□□□□ 0.29
SCLT1-208ENST00000506368 PTCD3Q96EY7 689 aaKnown RBP16.84■□□□□ 0.29
SCLT1-208ENST00000506368 MIPEPQ99797 713 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 PHACTR1Q9C0D0 580 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 GSTTP1A0A1W2PQM5 241 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 TBX10O75333 385 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 LYNP07948 512 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 RPL26P61254 145 aaKnown RBP16.84■□□□□ 0.29
SCLT1-208ENST00000506368 SPIRE1Q08AE8 756 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 Q4G0T1 1027 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 GPATCH4Q5T3I0 446 aaKnown RBP16.84■□□□□ 0.29
SCLT1-208ENST00000506368 CCDC62Q6P9F0 684 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 OTOAQ7RTW8 1153 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 NOP9Q86U38 636 aaKnown RBP16.84■□□□□ 0.29
SCLT1-208ENST00000506368 NRG4Q8WWG1 115 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 GJA10Q969M2 543 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 DCLK3Q9C098 648 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 SSX2IPQ9Y2D8 614 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 TBC1D30Q9Y2I9 924 aa16.84■□□□□ 0.29
SCLT1-208ENST00000506368 PPEF1O14829 653 aaPredicted RBP16.83■□□□□ 0.28
SCLT1-208ENST00000506368 ZBTB5O15062 677 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 PMM2O15305 246 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 TM9SF1O15321 606 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 IL1BP01584 269 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 DLATP10515 647 aaKnown RBP16.83■□□□□ 0.28
SCLT1-208ENST00000506368 YBX3P16989 372 aaKnown RBP eCLIP16.83■□□□□ 0.281e-6■■□□□ 12
SCLT1-208ENST00000506368 CA4P22748 312 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 ALDH1B1P30837 517 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 MAGEA4P43358 317 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 DSG1Q02413 1049 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 PABPC4Q13310 644 aaKnown RBP eCLIP16.83■□□□□ 0.28
SCLT1-208ENST00000506368 LSAMPQ13449 338 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 MAP7Q14244 749 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 CCNG2Q16589 344 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 UBE2SQ16763 222 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 ARHGAP44Q17R89 818 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 CNPY1Q3B7I2 92 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 LIN52Q52LA3 116 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 CCDC174Q6PII3 467 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 ST13P4Q8IZP2 240 aaPredicted RBP16.83■□□□□ 0.28
SCLT1-208ENST00000506368 ZNF75CPQ92670 426 aaPredicted RBP16.83■□□□□ 0.28
SCLT1-208ENST00000506368 PPP1R14BQ96C90 147 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 NUP85Q9BW27 656 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 TRIM55Q9BYV6 548 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 OSBPL8Q9BZF1 889 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 VPS11Q9H270 941 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 JMJD4Q9H9V9 463 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 NEU2Q9Y3R4 380 aa16.83■□□□□ 0.28
SCLT1-208ENST00000506368 EML1O00423 815 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 TYROBPO43914 113 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 FAM13AO94988 1023 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 PYGLP06737 847 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 PIM1P11309 404 aaPredicted RBP16.82■□□□□ 0.28
SCLT1-208ENST00000506368 SESN3P58005 492 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 BFSP1Q12934 665 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 SLC4A8Q2Y0W8 1093 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 CBWD6Q4V339 395 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 DALRD3Q5D0E6 543 aaKnown RBP16.82■□□□□ 0.28
SCLT1-208ENST00000506368 CBWD3Q5JTY5 395 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 CBWD5Q5RIA9 395 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 DSTYKQ6XUX3 929 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 PHLDB2Q86SQ0 1253 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 MTDHQ86UE4 582 aaKnown RBP16.82■□□□□ 0.28
SCLT1-208ENST00000506368 LMO3Q8TAP4 145 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 PPP2R3CQ969Q6 453 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 LMCD1Q9NZU5 365 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 KCND2Q9NZV8 630 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 SMIM31A0A1B0GVY4 71 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 CLDN3O15551 220 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 ATP5BP06576 529 aaKnown RBP16.82■□□□□ 0.28
SCLT1-208ENST00000506368 SPATA31C1P0DKV0 1188 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 CHRNB2P17787 502 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 KRT15P19012 456 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 CRABP2P29373 138 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 ZNF543Q08ER8 600 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.82■□□□□ 0.28
SCLT1-208ENST00000506368 PHC3Q8NDX5 983 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 ETNPPLQ8TBG4 499 aa16.82■□□□□ 0.28
SCLT1-208ENST00000506368 C1orf54Q8WWF1 131 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms