RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 PRKCIP41743 596 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 RBP5P82980 135 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 TMPRSS15P98073 1019 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 CDC42EP1Q00587 391 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 FKBP1CQ5VVH2 108 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 DSTYKQ6XUX3 929 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 TRABDQ9H4I3 376 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 STAP1Q9ULZ2 295 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 TCP11X1B4DZS4 312 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 EML1O00423 815 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 MAGEB2O15479 319 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 PTENP60484 403 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 SLC29A2Q14542 456 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 ZNF668Q96K58 619 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 ZNF560Q96MR9 790 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 SERPINB12Q96P63 405 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 Q9H521 79 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 WHRNQ9P202 907 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 RGPD5Q99666 1765 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 NUP188Q5SRE5 1749 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 TXNDC9O14530 226 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 NPM3O75607 178 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 SNHG28P0DPA3 235 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 CORO7P57737 925 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 KIF22Q14807 665 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 HP1BP3Q5SSJ5 553 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 ICE2Q659A1 982 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 PDCD2LQ9BRP1 358 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 GGA3Q9NZ52 723 aa11.37□□□□□ -0.59
LIMCH1-205ENST00000503057 BAZ2BQ9UIF8 2168 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 MYL3P08590 195 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 TPD52P55327 224 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 THOC5Q13769 683 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 MAP7Q14244 749 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 TMEM132DQ14C87 1099 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 Q3C1V9 767 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 CNPY4Q8N129 248 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 SLC20A1Q8WUM9 679 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 ELP3Q9H9T3 547 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 DUOX1Q9NRD9 1551 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 SPAG7O75391 227 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 TAL1P17542 331 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 RARRES1P49788 294 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 C1orf186Q6ZWK4 172 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 BAP1Q92560 729 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 ARL8AQ96BM9 186 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 ARHGEF26Q96DR7 871 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 TARS2Q9BW92 718 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 HSD3B7Q9H2F3 369 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 PSMC3IPQ9P2W1 217 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 SLC12A6Q9UHW9 1150 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 LRP6O75581 1613 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 ADAMTSL3P82987 1691 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 PHF20L1A8MW92 1017 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 A8MXQ7 604 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 RALAP11233 206 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 COG7P83436 770 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 KCNMA1Q12791 1236 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 GPAT2Q6NUI2 795 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 GTF3C2Q8WUA4 911 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 KLC4Q9NSK0 619 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 PRMT7Q9NVM4 692 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 RPSAP08865 295 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 KCNJ1P48048 391 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 CLEC16AQ2KHT3 1053 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 WDR75Q8IWA0 830 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 BBS5Q8N3I7 341 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 EIF1ADQ8N9N8 165 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 GLIS3Q8NEA6 775 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 GBP5Q96PP8 586 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 CYTH2Q99418 400 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 CGRRF1Q99675 332 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 FRMD8P1Q9BZ68 369 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 GANQ9H2C0 597 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 CHORDC1Q9UHD1 332 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 USP15Q9Y4E8 981 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 DISP2A7MBM2 1401 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 DDX3XO00571 662 aaKnown RBP eCLIP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 PSMD10O75832 226 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 MAGEA4P43358 317 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 MARSP56192 900 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 C1orf228Q6PIY5 440 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 SAMD7Q7Z3H4 446 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 SLC47A2Q86VL8 602 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 PPM1NQ8N819 430 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 ATP8B4Q8TF62 1192 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 SPIRE2Q8WWL2 714 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 KLHL8Q9P2G9 620 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 ANGPTL2Q9UKU9 493 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 AGAP1Q9UPQ3 857 aa11.36□□□□□ -0.59
LIMCH1-205ENST00000503057 HBP1O60381 514 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 SERPINB6P35237 376 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 TCF7P36402 384 aaPredicted RBP11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 NFX1Q12986 1120 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 RPS6KA2Q15349 733 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 EPC2Q52LR7 807 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 IRF2BP1Q8IU81 584 aa11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 ALKBH8Q96BT7 664 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 THOC1Q96FV9 657 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-205ENST00000503057 BTBD6Q96KE9 485 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms