RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 GARTP22102 1010 aa17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 WNT7BP56706 349 aa17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 FUKQ8N0W3 1084 aa17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 OTUD5Q96G74 571 aa17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 WNK4Q96J92 1243 aa17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 DCLK3Q9C098 648 aa17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 HAUS2Q9NVX0 235 aa17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 R3HDM2Q9Y2K5 976 aaKnown RBP17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 RIPK3Q9Y572 518 aa17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ATP2C2O75185 946 aa17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CYP1A1P04798 512 aaPredicted RBP17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ITIH4Q14624 930 aa17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 C2CD6Q53TS8 623 aa17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 VSIG10LQ86VR7 867 aa17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PLVAPQ9BX97 442 aa17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 NEU2Q9Y3R4 380 aa17.13■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 HNRNPDLO14979 420 aaKnown RBP17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ACSL3O95573 720 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CREB1P16220 341 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SLC1A1P43005 524 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CLDN10P78369 228 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 XRCC4Q13426 336 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 BAATQ14032 418 aaPredicted RBP17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 BRDTQ58F21 947 aaPredicted RBP17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 DAB2IPQ5VWQ8 1189 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 DCAF15Q66K64 600 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 OTUD6AQ7L8S5 288 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 USP37Q86T82 979 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SNF8Q96H20 258 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ASIC3Q9UHC3 531 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 UMODL1Q5DID0 1318 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 DOCK1Q14185 1865 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 O00370 1275 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 DNAJC8O75937 253 aaPredicted RBP17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CFHP08603 1231 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 IFNAR2P48551 515 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ITGA8P53708 1063 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SF3A3Q12874 501 aaKnown RBP eCLIP17.12■□□□□ 0.333e-13■■■■□ 21.7
MSH5-SAPCD1-208ENST00000498473 MTMR2Q13614 643 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 TRIP13Q15645 432 aaPredicted RBP17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 LMBRD2Q68DH5 695 aaPredicted RBP17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 VSTM1Q6UX27 236 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SYDE1Q6ZW31 735 aaPredicted RBP17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 TAOK1Q7L7X3 1001 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 NLRX1Q86UT6 975 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 FAM81BQ96LP2 452 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SERPINB12Q96P63 405 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ELAC2Q9BQ52 826 aaKnown RBP17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ARHGAP28Q9P2N2 729 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PCDHB2Q9Y5E7 798 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SNCAIPQ9Y6H5 919 aa17.12■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 RGS20O76081 388 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 TTC4O95801 387 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 MYBL1P10243 752 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 KCNA2P16389 499 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PTPRAP18433 802 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 NF2P35240 595 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CENPCQ03188 943 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PTP4A2Q12974 167 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 KLF1Q13351 362 aaPredicted RBP17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CYB5D1Q6P9G0 228 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 MON1BQ7L1V2 547 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 TAX1BP1Q86VP1 789 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ZNF677Q86XU0 584 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 MAIP1Q8WWC4 291 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 GPRASP2Q96D09 838 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PWWP2AQ96N64 755 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CCDC113Q9H0I3 377 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 RPAP3Q9H6T3 665 aaPredicted RBP17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CD248Q9HCU0 757 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 A1CFQ9NQ94 594 aaKnown RBP17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 C1orf112Q9NSG2 853 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PPP2R3BQ9Y5P8 575 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 COL11A1P12107 1806 aaPredicted RBP17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 VWA5AO00534 786 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ZBED4O75132 1171 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 C4BPAP04003 597 aaKnown RBP17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 NR3C2P08235 984 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ACO1P21399 889 aaKnown RBP17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 RTP1P59025 263 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ZACNQ401N2 412 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 SWSAP1Q6NVH7 229 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 ARHGEF2Q92974 986 aaKnown RBP17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 DNAJC17Q9NVM6 304 aaKnown RBP17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CTNNAL1Q9UBT7 734 aa17.11■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 FOXO6A8MYZ6 492 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 EXTL3O43909 919 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PEX10O60683 326 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 DGAT1O75907 488 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PROSCO94903 275 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 HLA-DRAP01903 254 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 VIMP08670 466 aaKnown RBP17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 CCND2P30279 289 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 MAN1A1P33908 653 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 TAS2R40P59535 323 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 PSMD6Q15008 389 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 KYNUQ16719 465 aa17.1■□□□□ 0.33
MSH5-SAPCD1-208ENST00000498473 TDRD10Q5VZ19 366 aaKnown RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms