RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 BMS1Q14692 1282 aaKnown RBP4.88□□□□□ -1.63
USP54-217ENST00000498213 WDR72Q3MJ13 1102 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 C2orf27AQ580R0 203 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 Q6ZUG5 572 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 C15orf52Q6ZUT6 534 aaKnown RBP4.88□□□□□ -1.63
USP54-217ENST00000498213 ZNF365Q70YC5 407 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 FASTKD5Q7L8L6 764 aaKnown RBP4.88□□□□□ -1.63
USP54-217ENST00000498213 LIMS2Q7Z4I7 341 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 CIR1Q86X95 450 aaPredicted RBP4.88□□□□□ -1.63
USP54-217ENST00000498213 ANKRD18AQ8IVF6 992 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 SUGP1Q8IWZ8 645 aaKnown RBP4.88□□□□□ -1.63
USP54-217ENST00000498213 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.88□□□□□ -1.63
USP54-217ENST00000498213 SH3RF2Q8TEC5 729 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 LPAR1Q92633 364 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 KISS1RQ969F8 398 aaPredicted RBP4.88□□□□□ -1.63
USP54-217ENST00000498213 RUNDC1Q96C34 613 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 MRFAP1L1Q96HT8 127 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 SAMD11Q96NU1 681 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 PRRX2Q99811 253 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 FSD1Q9BTV5 496 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 ZNF341Q9BYN7 854 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 ANKRD2Q9GZV1 360 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 ALG13Q9NP73 1137 aaKnown RBP4.88□□□□□ -1.63
USP54-217ENST00000498213 KCND1Q9NSA2 647 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 DDX20Q9UHI6 824 aaKnown RBP4.88□□□□□ -1.63
USP54-217ENST00000498213 MUTYHQ9UIF7 546 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 ZHX2Q9Y6X8 837 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 RPAP1Q9BWH6 1393 aaPredicted RBP4.88□□□□□ -1.63
USP54-217ENST00000498213 MGAMO43451 1857 aa4.88□□□□□ -1.63
USP54-217ENST00000498213 MYO15AQ9UKN7 3530 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 MAST2Q6P0Q8 1798 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.87□□□□□ -1.63
USP54-217ENST00000498213 FAM90A27PA6NNH2 459 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 KBTBD13C9JR72 458 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 CXCL11O14625 94 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 HIP1RO75146 1068 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 RASGRP1O95267 797 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 VCPP55072 806 aaKnown RBP4.87□□□□□ -1.63
USP54-217ENST00000498213 PPP2CBP62714 309 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 GNAI1P63096 354 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 PPP2CAP67775 309 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 FAM110CQ1W6H9 321 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 TREML2Q5T2D2 321 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 PKN3Q6P5Z2 889 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 GPR155Q7Z3F1 870 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 REXO1L1PQ8IX06 675 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 SLC44A5Q8NCS7 719 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 ARNTL2Q8WYA1 636 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 MBD6Q96DN6 1003 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 HOOK2Q96ED9 719 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 PLA2G12BQ9BX93 195 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 MRPL4Q9BYD3 311 aaKnown RBP4.87□□□□□ -1.63
USP54-217ENST00000498213 UBE2ZQ9H832 354 aaPredicted RBP4.87□□□□□ -1.63
USP54-217ENST00000498213 CD209Q9NNX6 404 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 IFT57Q9NWB7 429 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 ADAM29Q9UKF5 820 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 COQ6Q9Y2Z9 468 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 PLXNA1Q9UIW2 1896 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 EP300Q09472 2414 aaPredicted RBP4.87□□□□□ -1.63
USP54-217ENST00000498213 DNAH14Q0VDD8 3507 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 DOCK3Q8IZD9 2030 aa4.87□□□□□ -1.63
USP54-217ENST00000498213 NAV2Q8IVL1 2488 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.86□□□□□ -1.63
USP54-217ENST00000498213 ESYT3A0FGR9 886 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 TMEM221A6NGB7 291 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 CYSRT1A8MQ03 144 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 PROB1E7EW31 1015 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 ZNF561-AS1K7EIQ3 104 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 M0R296 226 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 SNAP23O00161 211 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 SCDO00767 359 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 MATN3O15232 486 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 SUV39H1O43463 412 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 CUTAO60888 179 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 CLASP2O75122 1294 aaKnown RBP4.86□□□□□ -1.63
USP54-217ENST00000498213 KLHL18O94889 574 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 AMY2AP04746 511 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 CSF2RAP15509 400 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 AMY2BP19961 511 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 POU3F3P20264 500 aaPredicted RBP4.86□□□□□ -1.63
USP54-217ENST00000498213 PTGS1P23219 599 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 NEXNQ0ZGT2 675 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 USP10Q14694 798 aaKnown RBP4.86□□□□□ -1.63
USP54-217ENST00000498213 LEXMQ3ZCV2 418 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 EPHA10Q5JZY3 1008 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 CCDC30Q5VVM6 783 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 SLFN13Q68D06 897 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 BRAPQ7Z569 592 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 TTC9BQ8N6N2 239 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 HIPK4Q8NE63 616 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 C8orf49Q96NF6 230 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 RBM15Q96T37 977 aaKnown RBP eCLIP4.86□□□□□ -1.63
USP54-217ENST00000498213 CELF4Q9BZC1 486 aaKnown RBP4.86□□□□□ -1.63
USP54-217ENST00000498213 INCENPQ9NQS7 918 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 CWC25Q9NXE8 425 aaPredicted RBP4.86□□□□□ -1.63
USP54-217ENST00000498213 GAKO14976 1311 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 MYBBP1AQ9BQG0 1328 aaKnown RBP4.86□□□□□ -1.63
USP54-217ENST00000498213 BRWD1Q9NSI6 2320 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 PSME4Q14997 1843 aa4.86□□□□□ -1.63
USP54-217ENST00000498213 SLC12A8A0AV02 714 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms