RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 RUNDC3BQ96NL0 473 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 SRPK1Q96SB4 655 aaKnown RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 ATP6V1HQ9UI12 483 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 VPS4AQ9UN37 437 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 CASQ2O14958 399 aaPredicted RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 TADA2AO75478 443 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 PDE8BO95263 885 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 CAPN1P07384 714 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 MMEP08473 750 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 ALDH3A1P30838 453 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 STAT2P52630 851 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 GSCP56915 257 aaPredicted RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 GRSF1Q12849 480 aaKnown RBP eCLIP5.45□□□□□ -1.54
USP54-216ENST00000498143 SLC9A5Q14940 896 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 VEPH1Q14D04 833 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 TEAD4Q15561 434 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 BTBD8Q5XKL5 378 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 KANK3Q6NY19 840 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 KCNV1Q6PIU1 500 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 HEATR3Q7Z4Q2 680 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 CDAN1Q8IWY9 1227 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 GALNT15Q8N3T1 639 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 RHBDD1Q8TEB9 315 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 DDI1Q8WTU0 396 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 ANKRD7Q92527 254 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 LIN37Q96GY3 246 aaPredicted RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 SEC63Q9UGP8 760 aaKnown RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 ADAMTS8Q9UP79 889 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 PRG3Q9Y2Y8 225 aaPredicted RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 NCAPD2Q15021 1401 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 IQANK1A0A1B0GTG1 560 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 GTPBP10A4D1E9 387 aaKnown RBP5.44□□□□□ -1.54
USP54-216ENST00000498143 GOLGA8AA7E2F4 631 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 C1QTNF9BB2RNN3 333 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 GRM6O15303 877 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 HYAL3O43820 417 aaPredicted RBP5.44□□□□□ -1.54
USP54-216ENST00000498143 B4GALT4O60513 344 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 PEX10O60683 326 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 C1QTNF9P0C862 333 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 SFTPCP11686 197 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 MARK3P27448 753 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 UCNP55089 124 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 PPP2R2AP63151 447 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 GRB14Q14449 540 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 PLEKHG6Q3KR16 790 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 KLC3Q6P597 504 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 FAM47EQ6ZV65 393 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 SEPT1Q8WYJ6 367 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 RILPL2Q969X0 211 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 LRRC45Q96CN5 670 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 ANO3Q9BYT9 981 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 MIS12Q9H081 205 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 PRO3102Q9H379 93 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 LMBRD1Q9NUN5 540 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 GTF2A1LQ9UNN4 478 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 PHRF1Q9P1Y6 1649 aaKnown RBP5.44□□□□□ -1.54
USP54-216ENST00000498143 ZFYVE26Q68DK2 2539 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 GPR182O15218 404 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 ATP5HO75947 161 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 RPN1P04843 607 aaKnown RBP5.44□□□□□ -1.54
USP54-216ENST00000498143 SP9P0CG40 484 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 GNG11P61952 73 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 TMEM132BQ14DG7 1078 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 ASIC2Q16515 512 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 SLFNL1Q499Z3 407 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 FAM181AQ8N9Y4 354 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 RAPGEF5Q92565 580 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 APPBP2Q92624 585 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 ACDQ96AP0 544 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 IFT74Q96LB3 600 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 MTMR9Q96QG7 549 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 NAA15Q9BXJ9 866 aaKnown RBP5.44□□□□□ -1.54
USP54-216ENST00000498143 SFXN1Q9H9B4 322 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 XAB2Q9HCS7 855 aaKnown RBP5.44□□□□□ -1.54
USP54-216ENST00000498143 HDAC6Q9UBN7 1215 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 WNT16Q9UBV4 365 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 SH3D21A4FU49 640 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 HOXB7P09629 217 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 OR1G1P47890 313 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 DEFB103AP81534 67 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 CAP1Q01518 475 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 MFSD10Q14728 455 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 MTERF2Q49AM1 385 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 ALFQ53S48 1182 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 NCAPH2Q6IBW4 605 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 GPAT2Q6NUI2 795 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 PALB2Q86YC2 1186 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 MAP7D3Q8IWC1 876 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 CCDC83Q8IWF9 413 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 CERS5Q8N5B7 392 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 TRIML2Q8N7C3 387 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 HPS3Q969F9 1004 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 MIEF2Q96C03 454 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 PPP1R16BQ96T49 567 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 ISCA1Q9BUE6 129 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 TRMT61BQ9BVS5 477 aaKnown RBP5.44□□□□□ -1.54
USP54-216ENST00000498143 NAPBQ9H115 298 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 ERVK-5Q9HDB9 667 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 CD320Q9NPF0 282 aa5.44□□□□□ -1.54
USP54-216ENST00000498143 DDX19AQ9NUU7 478 aaKnown RBP5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms