RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 ADAMTS17Q8TE56 1095 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 ARMC5Q96C12 935 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 ZSWIM3Q96MP5 696 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 FEZ1Q99689 392 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 VCPKMTQ9H867 229 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 INCENPQ9NQS7 918 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 RBPJLQ9UBG7 517 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 MORF4L1Q9UBU8 362 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 SRRDQ9UH36 339 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 ANAPC4Q9UJX5 808 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 GABRQQ9UN88 632 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 PCDHB4Q9Y5E5 795 aa5.68□□□□□ -1.5
CSMD3-208ENST00000497026 MYPNQ86TC9 1320 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 TCRBV5S2A0A599 114 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 H7BY64 318 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 DDX3XO00571 662 aaKnown RBP eCLIP5.67□□□□□ -1.5
CSMD3-208ENST00000497026 HGSO14964 777 aaPredicted RBP5.67□□□□□ -1.5
CSMD3-208ENST00000497026 FGAP02671 866 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 SOX10P56693 466 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 SLC20A2Q08357 652 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 KIF22Q14807 665 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 ALX1Q15699 326 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 KCNT2Q6UVM3 1135 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 LBX2Q6XYB7 198 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 RASGRP2Q7LDG7 609 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 TBC1D10CQ8IV04 446 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 SPICE1Q8N0Z3 855 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 KYQ8NBH2 561 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 SH3TC2Q8TF17 1288 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 LPAR1Q92633 364 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 CEP95Q96GE4 821 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 ZNF333Q96JL9 665 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 PHF20Q9BVI0 1012 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 NACAP1Q9BZK3 213 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 EPN3Q9H201 632 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 PORCNQ9H237 461 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 RPAP3Q9H6T3 665 aaPredicted RBP5.67□□□□□ -1.5
CSMD3-208ENST00000497026 KANSL2Q9H9L4 492 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 BTBD7Q9P203 1132 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 NYAP2Q9P242 653 aa5.67□□□□□ -1.5
CSMD3-208ENST00000497026 TNPO2O14787 897 aaKnown RBP5.66□□□□□ -1.5
CSMD3-208ENST00000497026 WDR46O15213 610 aaKnown RBP5.66□□□□□ -1.5
CSMD3-208ENST00000497026 ORC4O43929 436 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 NMT2O60551 498 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 DGKIO75912 1065 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 ZSCAN20P17040 1043 aaPredicted RBP5.66□□□□□ -1.5
CSMD3-208ENST00000497026 NOVP48745 357 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 FLT3LGP49771 235 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 RGS19P49795 217 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 PRMT2P55345 433 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 HAND2P61296 217 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 NKX3-2P78367 333 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 TESK1Q15569 626 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 FAM47AQ5JRC9 791 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 YOD1Q5VVQ6 348 aaPredicted RBP5.66□□□□□ -1.5
CSMD3-208ENST00000497026 LRRC47Q8N1G4 583 aaKnown RBP5.66□□□□□ -1.5
CSMD3-208ENST00000497026 KCNJ15Q99712 375 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 PAGR1Q9BTK6 254 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 ARHGEF4Q9NR80 690 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 IL17RBQ9NRM6 502 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 DIAPH3Q9NSV4 1193 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 FBXO28Q9NVF7 368 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 MTMR4Q9NYA4 1195 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 GJD2Q9UKL4 321 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 RABGAP1Q9Y3P9 1069 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 NPFFR2Q9Y5X5 522 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 FRMPD3Q5JV73 1810 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 KIAA0100Q14667 2235 aaKnown RBP5.66□□□□□ -1.5
CSMD3-208ENST00000497026 NEDD4P46934 1319 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 RAD50Q92878 1312 aa5.66□□□□□ -1.5
CSMD3-208ENST00000497026 HIP1O00291 1037 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 TADA3O75528 432 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 NDUFB10O96000 172 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 TSPY3P0CV98 308 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 TSPY8P0CW00 308 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 COL6A2P12110 1019 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 RPL13P26373 211 aaKnown RBP5.65□□□□□ -1.5
CSMD3-208ENST00000497026 CHMLP26374 656 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 KRTAP10-2P60368 255 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 TFAP4Q01664 338 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 GRIN1Q05586 938 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 MAP4K2Q12851 820 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 ADAM9Q13443 819 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 COG2Q14746 738 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 ARHGEF6Q15052 776 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 NTRK3Q16288 839 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 SLC9C1Q4G0N8 1177 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 FAM83BQ5T0W9 1011 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 PHF19Q5T6S3 580 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 TMC5Q6UXY8 1006 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 GPR142Q7Z601 462 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 ZNF444Q8N0Y2 327 aaPredicted RBP5.65□□□□□ -1.5
CSMD3-208ENST00000497026 REPS2Q8NFH8 660 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 GPRC5AQ8NFJ5 357 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 PIP4K2CQ8TBX8 421 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 MKL1Q969V6 931 aa5.65□□□□□ -1.5
CSMD3-208ENST00000497026 TOE1Q96GM8 510 aaKnown RBP5.65□□□□□ -1.5
CSMD3-208ENST00000497026 NUP88Q99567 741 aaPredicted RBP5.65□□□□□ -1.5
CSMD3-208ENST00000497026 AARSD1Q9BTE6 412 aaKnown RBP5.65□□□□□ -1.5
CSMD3-208ENST00000497026 TRIM55Q9BYV6 548 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms