RNA–Protein interactions for RNA: ENST00000496946.1

SNRNP48-202, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

TSL 2

Gene SNRNP48, Length 2,610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-202ENST00000496946 EVCP57679 992 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CBX3Q13185 183 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 WDR43Q15061 677 aaKnown RBP eCLIP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CCNG2Q16589 344 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 WSCD2Q2TBF2 565 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ANKDD1AQ495B1 522 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CEP78Q5JTW2 689 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 TWF2Q6IBS0 349 aaKnown RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 TMEM53Q6P2H8 277 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ZNF600Q6ZNG1 722 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 STK32CQ86UX6 486 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CABP7Q86V35 215 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 FAM178BQ8IXR5 827 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CCDC13Q8IYE1 715 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ZNF540Q8NDQ6 660 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ZNF397Q8NF99 534 aaPredicted RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 NUP43Q8NFH3 380 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CACTINQ8WUQ7 758 aaKnown RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 POF1BQ8WVV4 589 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 LPIN2Q92539 896 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 OSBP2Q969R2 916 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 TNIP3Q96KP6 325 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 SPATA17Q96L03 361 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 SNX27Q96L92 541 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CATSPER2Q96P56 530 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 NR1H4Q96RI1 486 aaPredicted RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 BARD1Q99728 777 aaKnown RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 KRTAP4-12Q9BQ66 201 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 EDEM3Q9BZQ6 932 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 SLC13A1Q9BZW2 595 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 SMARCAD1Q9H4L7 1026 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 KIAA1586Q9HCI6 787 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 AATFQ9NY61 560 aaKnown RBP eCLIP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ACTR10Q9NZ32 417 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 MOCS1Q9NZB8 636 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CEP72Q9P209 647 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ZNF624Q9P2J8 865 aaPredicted RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 HESX1Q9UBX0 185 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 MTRF1LQ9UGC7 380 aaKnown RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 MTF2Q9Y483 593 aaPredicted RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.35□□□□□ -1.871e-8■□□□□ 8.8
SNRNP48-202ENST00000496946 SNX8Q9Y5X2 465 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 PTPRGP23470 1445 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 LRP5O75197 1615 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 KLRG2A4D1S0 409 aaPredicted RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CHUKO15111 745 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CYP27B1O15528 508 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ASAP2O43150 1006 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ZW10O43264 779 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 EXTL3O43909 919 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 B4GALT4O60513 344 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 PLOD3O60568 738 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 TGDSO95455 350 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CAPNS1P04632 268 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 PLS3P13797 630 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ATP6V1B1P15313 513 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ZKSCAN1P17029 563 aaPredicted RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 HNRNPH1P31943 449 aaKnown RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CSTF2P33240 577 aaKnown RBP eCLIP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 BMP8BP34820 402 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 HOXD12P35452 270 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CETN2P41208 172 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ETV1P50549 477 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 MTX1Q13505 466 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 STIM1Q13586 685 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 PSMD6Q15008 389 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 SLC14A2Q15849 920 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ASIC2Q16515 512 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 SKOR2Q2VWA4 1001 aaPredicted RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 TUBB8Q3ZCM7 444 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 HSF5Q4G112 596 aaPredicted RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ATP13A4Q4VNC1 1196 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CCDC121Q6ZUS5 278 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 PASD1Q8IV76 773 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 SYCP3Q8IZU3 236 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 FAM26EQ8N5C1 309 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 NAT8LQ8N9F0 302 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 C7orf57Q8NEG2 295 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 FLAD1Q8NFF5 587 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 NEK11Q8NG66 645 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 NOC3LQ8WTT2 800 aaKnown RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ATXN2LQ8WWM7 1075 aaKnown RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 HIC2Q96JB3 615 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 SEC16BQ96JE7 1060 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 CARD11Q9BXL7 1154 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 NCOR1P1Q9H4R4 102 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 PHAXQ9H814 394 aaKnown RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 NCOA5Q9HCD5 579 aaKnown RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ALG13Q9NP73 1137 aaKnown RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 NLRC4Q9NPP4 1024 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ANKEF1Q9NU02 776 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 DDX18Q9NVP1 670 aaKnown RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 SLTMQ9NWH9 1034 aaKnown RBP eCLIP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 HOOK1Q9UJC3 728 aaKnown RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 SH3BGRL2Q9UJC5 107 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 AKT3Q9Y243 479 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 ATP6V1DQ9Y5K8 247 aa3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 BZW2Q9Y6E2 419 aaKnown RBP3.35□□□□□ -1.87
SNRNP48-202ENST00000496946 SCAPERQ9BY12 1400 aa3.34□□□□□ -1.87
SNRNP48-202ENST00000496946 MYPNQ86TC9 1320 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms